Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4307 ATGGCATTCATCAAATCAAGGGTAAACTTTCACTTACACCATTCTCTTTCCCCTTTCTTACCACACACTTTCAGACTATGTTCTTCTTCACCTCTTGTTTCAGAACACGACACCAATGACAACAACACCACTCCTCAAAACACAAATCTATCTCCCGAAGACACTCACATAGTCGATAAATTTCACACCATCATCAAAGACCACTACCGCAAAAACCCTAACCCTAACGCCGTTTCACCTTCACTAAATCTCTCCATACCTGATCTTTCAATCGAATTTTCCAAAATCTCAACTGTTTATTCAGTTTCCCCCTCAATCACCCGCCGTGCGATCGAGAAATGCAGTGGTGTTCGCCACGGTATCCCATTCCTTCAATCCCTAGCTTTCTTCAACTGGGCCACCACGCTAGAAGGCTTCCCATCATCCCCTGAGCCTTACAATGAGATGATTGACCTCGCTGGAAAGCTCAGGCATTTCGATTTAGCATGGCATTTGATCGATCTGATGAAATCGCGCGGTGTTAGAATAACGGTCAGCACGTTCTCTGTTCTCGTAAGGCGATATGTTAGGGCTGGATTGGCTGCGGAGGCCGTCCATGCTTTTAACCGTATGGAAGACTATGGTTGTAAGCCTGATAAGGTTTCATTTTCGATTGTGATTAGTAGTTTATGTAAGAAGAGAAGGGCTAGTGAAGCAGAATTGTTTTTTGATAGTCTTAAGCATAAATTTGAACCTGATGTTATAGTTTATACTAGTTTAGTTCATGGTTGGTGTCGTGCTGGTGATATAGCGAAAGCAGAGGAGGTTTTCAGTGATATGAAGGAGGCTGGTGTAAAGCCTAATGTTTATACTTATAGCATTGTGATTGATTCGCTCTGTCGGTGTGGGCAAATTACTCGTGCTCATGATGTTTTCTCTGAGATGATTGATGCTGGTTGCGATCCTAATGCTGTTACTTTTAACAGTCTTATGAGGGTTCATGTGAAAGCTGGTAGGACTGAAAAGGTCTTGCAGGTTTATAATCAAATGAAGAGGCTTGGTTGTGCTGCTGATACGATTAGCTATAATTTCTTAATTGAGAGTCATTGCAAGGATGAGAATCTGGATGAAGCTGTGAAGGTACTTGATACAATGGTTAAGAAAGGGGTTGCTCCTAATGCATCTACTTTCAATTCAATTTTTGGATGCATAGCTGAGTTGCATGATGTGAATGGTGCACATCGGATGTATGCTAAAATGAAGGAACTGAAGTGCATGCCTAATACGCTGACTTATAATATACTGATGAGAATGTTTGCTGACTCAAAATCTATTGACATGGTTCTGAAGTTGAAAAAGGAAATGGATGAGAGTGAAGTTGAACCTAATGTCAATACTTACCGGATTTTGATTTTGATGTTTTGTGAAAAGGGGCACTGGAATAATGCATACAACTTAATGAAGGAGATGGTTGAAGAAAAATGTCTAAAGCCAAATCTATCGATTTATGAAACGGTTTTGGAGCTGCTGAGGAATGCTGGACAGCTTAAAAAGCATGAAGAGTTGGTCGAGAAGATGGTTGCTAGAGGATTTGTCTCTCCTCGTCCTTTGTAG 1593 0.4112 MAFIKSRVNFHLHHSLSPFLPHTFRLCSSSPLVSEHDTNDNNTTPQNTNLSPEDTHIVDKFHTIIKDHYRKNPNPNAVSPSLNLSIPDLSIEFSKISTVYSVSPSITRRAIEKCSGVRHGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVARGFVSPRPL* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4307 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Mtr3g4307 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Mtr3g4307 530 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 11 526 - -
Mtr3g4307 530 TIGRFAM PPR: pentatricopeptide repeat domain 459 492 IPR002885 -
Mtr3g4307 530 TIGRFAM PPR: pentatricopeptide repeat domain 353 387 IPR002885 -
Mtr3g4307 530 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Mtr3g4307 530 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Mtr3g4307 530 TIGRFAM PPR: pentatricopeptide repeat domain 180 212 IPR002885 -
Mtr3g4307 530 TIGRFAM PPR: pentatricopeptide repeat domain 248 282 IPR002885 -
Mtr3g4307 530 TIGRFAM PPR: pentatricopeptide repeat domain 146 177 IPR002885 -
Mtr3g4307 530 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Mtr3g4307 530 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Mtr3g4307 530 TIGRFAM PPR: pentatricopeptide repeat domain 214 242 IPR002885 -
Mtr3g4307 530 Pfam PPR repeat family 420 468 IPR002885 -
Mtr3g4307 530 Pfam PPR repeat family 245 294 IPR002885 -
Mtr3g4307 530 Pfam PPR repeat family 186 225 IPR002885 -
Mtr3g4307 530 Pfam PPR repeat family 351 395 IPR002885 -
Mtr3g4307 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Mtr3g4307 530 Gene3D Tetratricopeptide repeat domain 237 311 IPR011990 GO:0005515
Mtr3g4307 530 Gene3D Tetratricopeptide repeat domain 312 401 IPR011990 GO:0005515
Mtr3g4307 530 Gene3D Tetratricopeptide repeat domain 122 232 IPR011990 GO:0005515
Mtr3g4307 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Mtr3g4307 530 Gene3D Tetratricopeptide repeat domain 402 528 IPR011990 GO:0005515
Mtr3g4307 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Mtr3g4307 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Mtr3g4307 530 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 11 526 - -
Mtr3g4307 530 Pfam PPR repeat 146 174 IPR002885 -
Mtr3g4307 530 Pfam PPR repeat 318 348 IPR002885 -
Mtr3g4307 530 SUPERFAMILY TPR-like 216 485 IPR011990 GO:0005515
Mtr3g4307 530 MobiDBLite consensus disorder prediction 34 53 - -
Mtr3g4307 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Mtr3g4307 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Mtr3g4307 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4307 146 527 Glycosyltransferase AT1G05670 29.504 1.49e-55 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4307 - - gmx:100800850 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4307 3 56983496 56986179 Mtr3g4307 3 56983496 56986179 ECH