Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4299 ATGTTATCGCTTAATACCTCATGTGGATTTTGCGGCGTTTCCACATCAACAAAAGCATTCCAATTTCACTTTCGAACTTCATCTTCACCATTTTTCTTCTCTCCCCTTAACAACTTTAAACTCCGCTCCTCCATTGCGAAATCCTTTTCTACTTTCTCCAATGATTCGAACTCCTCCACCGAAGAACCAAAGTCGAATTACGCCGGCGTGCTGTTGGAAGAAATCGTCCACGACGGTGGAATCAAATCTGGAAAATTGAGACTCGATAGTTGGATTTCTTCTCGCATTAATGGCATCAGTAGAGCTCGCGTCCAGTCAAGTATTAAAGCTGGACTCGTTCATGTCAATGGCCGTGTTGTTGATAAGGTTTCTTTCAATGTCAGAGCTGGGGATGAGATCAAGTGCACAATTGCGGAGTTGCAGCAGTTGAGAGCTGTGCCGGAAAACATACCTCTGGATATAGTTTATGAAGATGACCATTTGCTAGTCATAAATAAACCTGCTCACATGGTTGTGCATCCAGCACCTGGCAATACGTCTGGGACACTTGTAAATGGCATTCTGCACCATTGCAACCTGCCAAATGTTGAATTTTCTAAAGAGGAAGCTCTTTCAGATACAGAAGATTCTGATGATGAACTCAATGGTTTCTCATCCCAGTCAAGTTCTTCTGTAGGGTTAGATTCTAGATTGTCTATGGCATCAATTCGCCCAGGGATTGTACACAGATTAGACAAAGGCACGAGTGGGTTGCTAGTTGTTGCTAAGAATGAACATTCTCATATGAAATTGTCTGAACAATTCAAGCTACGCACTATCAAGAGGGTATATGTTAGTCTCACAGCTGGGGTACCTACTCCAGTTTCTGGGCGTGTTGAGGTTCCTGTTGGCCGTGATCCTAATAACCGGCTTCGTATGATCGCTGTTGCTGGACTAGTTAATTCTGTGAAGGCCCGTCATGCAGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGTAGCTGTGCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCACATGCCAAGTATTTGGGTGTACCTCTGCTAGGTGATGAGGTATATGGAGGGACGAAAAGCATGGTCTTGTCATTGCTACGGCCACGAACAACTCCAAGTTTGCATAGCGAAATGTTTAAAACAGTTTCTGGGCTAGATAGGCCTTGCCTTCATGCCTCGACTCTCGGGTTTCAGCATCCTCATACAGGGGAGCAGGTGCACTTTTCATGTGAGCCCCCTGTAGATTTTAATGACATTTTGAGCCAGCTTCGCAGAATTGGTAGTGAAAGTATTTCTCACTCAAAGGCCAAATTTTTAAAAGGGGTATTGTAA 1371 0.4427 MLSLNTSCGFCGVSTSTKAFQFHFRTSSSPFFFSPLNNFKLRSSIAKSFSTFSNDSNSSTEEPKSNYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDTEDSDDELNGFSSQSSSSVGLDSRLSMASIRPGIVHRLDKGTSGLLVVAKNEHSHMKLSEQFKLRTIKRVYVSLTAGVPTPVSGRVEVPVGRDPNNRLRMIAVAGLVNSVKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTPSLHSEMFKTVSGLDRPCLHASTLGFQHPHTGEQVHFSCEPPVDFNDILSQLRRIGSESISHSKAKFLKGVL* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4299 456 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 85 438 - -
Mtr3g4299 456 Gene3D - 81 142 IPR036986 GO:0003723
Mtr3g4299 456 ProSiteProfiles S4 RNA-binding domain profile. 86 159 - -
Mtr3g4299 456 SUPERFAMILY Pseudouridine synthase 146 437 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mtr3g4299 456 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 85 438 - -
Mtr3g4299 456 SUPERFAMILY Alpha-L RNA-binding motif 85 173 - -
Mtr3g4299 456 Gene3D Pseudouridine synthase 209 440 - -
Mtr3g4299 456 Gene3D Pseudouridine synthase 153 204 - -
Mtr3g4299 456 SMART s4_6 86 151 IPR002942 GO:0003723
Mtr3g4299 456 ProSitePatterns Rlu family of pseudouridine synthase signature. 241 255 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mtr3g4299 456 MobiDBLite consensus disorder prediction 202 225 - -
Mtr3g4299 456 Pfam RNA pseudouridylate synthase 160 355 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mtr3g4299 456 CDD PseudoU_synth_RluA_like 161 410 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mtr3g4299 456 Pfam S4 domain 87 133 IPR002942 GO:0003723
Mtr3g4299 456 CDD S4 87 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4299 Mtr-Chr3 56902923 56908102 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4299 K06180 - gmx:100810383 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4299 3 56902923 56908102 Mtr3g4299 3 56902923 56908102 ECH