Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4250 ATGTCTACATCAGAAGTTGAGAAGAAGGTCGAGGAAGAGAATCAAGCTCCTAAAGGAGGTGAACTCTTGTTCTGTGGTGCCACGTGTTGGGATATCGTTGGTCGTCGCAAAGGTCCTGCTGAGGGTAATTTGGTCTCTCCTTCCCGCCTCCGTCCTCTCGTCGGCATCAGTATTCGATACGTTGCATCGGGCTGCGCGTCGTGTCATTGCGTGGCATTGGACGTTGAAGGGCGTTGCTATACATGGGGGCGTAATGAGAAAGGGCAACTGGGTCATGGAGATACCATTCAGCGTGATAGGCCAACTGTGGTTTCTGAACTTTCAAAATACAAGATTGTTCAAGCTGGAGCTGGGAAGAGCCATACTGTAGTTGTTACAGAGGATGGAAATTCCTTAGCATTTGGATGGAACAAACATGGACAGCTAGGTTCTGGTTCTGCAAAAACTGAAATTGAATCATCCCCTATTCGCTGTCTCGTGTCTGAAGTTACATATGCTACATGTGGTGGCGACTTTTCTGTGTGGCTATCTTCAGTCGAAGGATCTTCTATACTGACTGCTGGGCTTCCACAGTATGGGCAGCTTGGGCATGGAACAGATAACGAGTATAATTCCAAAGACAGTTCTGTGAAATTAGTTTATGAAGCACAGCCACGTCCTCGAGCAATAGCTTCCCTTGCTGGGGAAACCATTGTCAAGGTGGCATGTGGAACAAATCACACAGTGGCGGTGGATAAGAATGGCTTTGTCTACACGTGGGGTTATGGTGGTTATGGAAGGCTAGGACATCGGGAGCAGAAGGATGAATTCGCTCCACGCCGTGTTGATATTTTCACGAATAGAAACGTGTTGCCTCCTGATGCAATTATTTCAGCAGGTTCTGTGAATTCTGCTTGTACTGCAGCTGGAGGGCAGCTGTACATGTGGGGCAAAATTAAGAACACCGGTGATGACTGGATGTACCCTAAGCCTCTAATGGATTTAAGTGGTTGGAATATACGATGCATGGATTCAGGGGGTATGCACCATTTTGTTGGGGCTGATTCCTCGTGCATAAGTTGGGGTCATGCTCAGAATGGAGAGCTGGGATACGGACCTAATGGACAGAAGTCTTCAGCTGTTCCCAAGAAGGTGGATATACTTGAGGGTATGCATGTAATGAGTGTTGCTTGTGGTTTGGGTCATTCCATGGTTGTGGTTGACAGAGCAAATATTGCTGATAGACTTGATCAGCTTGATACACATGATGGCAAAGCTGTTGGTGAAGGTAATGAGACCGTGAATAAAACTCAAGTGCCTAAAAAGGCGGCACCAAAAACAGGTGCAACTGCAAAGAAAGCTGACAGCTCAAAGAAGAGGAAAAAAGCAAAAGATGCATCTGACTCAGAAGAAGAGCAAGAAGAGGCTGAAGAAAGTGACAATAGCGAGGATGAAGTTAATGGTGAGGCTGAGGTTAAAACATCACGTGGTGGAAAAAGTTCTGGCAAGGGCCGGGGTAAGGCATCCAAAGTGTCGGAGTCTGAGGGTAAAGGCTCTGGCCGAGGACGCGGTCGTGCTCCTGCAAATAACAGCAGCTCTAAATCTTCTCCAGTGAAGTCAACCGGTAAGAGAGGAAGACCCAGAAAGTCATGA 1632 0.4724 MSTSEVEKKVEEENQAPKGGELLFCGATCWDIVGRRKGPAEGNLVSPSRLRPLVGISIRYVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKIVQAGAGKSHTVVVTEDGNSLAFGWNKHGQLGSGSAKTEIESSPIRCLVSEVTYATCGGDFSVWLSSVEGSSILTAGLPQYGQLGHGTDNEYNSKDSSVKLVYEAQPRPRAIASLAGETIVKVACGTNHTVAVDKNGFVYTWGYGGYGRLGHREQKDEFAPRRVDIFTNRNVLPPDAIISAGSVNSACTAAGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNIRCMDSGGMHHFVGADSSCISWGHAQNGELGYGPNGQKSSAVPKKVDILEGMHVMSVACGLGHSMVVVDRANIADRLDQLDTHDGKAVGEGNETVNKTQVPKKAAPKTGATAKKADSSKKRKKAKDASDSEEEQEEAEESDNSEDEVNGEAEVKTSRGGKSSGKGRGKASKVSESEGKGSGRGRGRAPANNSSSKSSPVKSTGKRGRPRKS* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4250 543 MobiDBLite consensus disorder prediction 499 513 - -
Mtr3g4250 543 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Mtr3g4250 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Mtr3g4250 543 MobiDBLite consensus disorder prediction 415 543 - -
Mtr3g4250 543 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Mtr3g4250 543 Pfam Regulator of chromosome condensation (RCC1) repeat 185 244 IPR000408 -
Mtr3g4250 543 Pfam Regulator of chromosome condensation (RCC1) repeat 247 285 IPR000408 -
Mtr3g4250 543 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Mtr3g4250 543 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Mtr3g4250 543 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Mtr3g4250 543 PANTHER PROTEIN RCC2 5 527 IPR028641 -
Mtr3g4250 543 MobiDBLite consensus disorder prediction 463 478 - -
Mtr3g4250 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Mtr3g4250 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Mtr3g4250 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Mtr3g4250 543 MobiDBLite consensus disorder prediction 518 533 - -
Mtr3g4250 543 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Mtr3g4250 543 SUPERFAMILY RCC1/BLIP-II 19 402 IPR009091 -
Mtr3g4250 543 Coils Coil 452 472 - -
Mtr3g4250 543 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Mtr3g4250 543 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Mtr3g4250 543 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Mtr3g4250 543 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Mtr3g4250 543 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Mtr3g4250 543 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Mtr3g4250 543 Gene3D - 212 446 IPR009091 -
Mtr3g4250 543 Gene3D - 5 211 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4250 Mtr-Chr3 56356116 56362854 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4250 - - pvu:PHAVU_009G015100g 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4250 3 56356116 56362854 Mtr3g4250 3 56356116 56362854 ECH