Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4245 ATGAGCAAAAGAGCCGCACCTGATCCTGTGGCAGTTCTACGTGGCCACCGTGCTTCCGTCACTGATATTTGTTTTCATCCCTCTAAGCCTATCTTATTCTCCGGTTCCGCTGACGGTGAACTGCGAATTTGGGATACATTTCGCCGTCAAACTCTTTCATCAGCATGGTTACATAGTGCTGCACATGGGATTCTTGCTCTTGCCAGTAGTTCTTCACTTGGGACTAATAAATTTGTCAGCCAGGGTAGAGATGGAACTGTGAAAGTTTGGGATTTTGATGATACTGGTTTGTCCAGGATTCCATCCGTTACAATCAAGACAAACAGTTACCACTTTTGTAAATTTTCCTTGGCTAAGAATCAGAGTACCGGTTCAAAAGCAGGGGAAGCATCAAAAGATTGCCTTGAAACAGAAGAGGTTCATACCAATCAAAGTTGTTCTGAAAGCTCTGAAGGGCTATCATATGTGGCTTTGTCGGGGGAGAACTCTTCTGAGGTTGAAATTTGGGATCTCAAGTCAGCTGAAAGATTTGCACGTCTCCCTTCAAGTATTGGTAGTAACTCTTCAAGTGTTAGCAGCAAAGGCATGTGCATGGCACTTCAATTGTGTGTACCATCTGAATCACAAGGATTTTTAAATGTCATGGCTGGATATGAAGATGGAACTATGCTTTGGTGGGATGTACGGAATCCTGGAGTTCCAGTAAGTTCTGTGAAATTCCATTCTGAGCCAGTTCTGAGCATTGGTATTGACGGGTCTTGCAAAGGGGGCATCTCGGGAGCTGCAGATGAGAGGATTGTGATGTACAGCTTGGATCATTCTTCGGGTACATGTGTGGTCAATAAAGAAATCACATTGGAGCGACCTGGTATCTCAGGCACCTCAATTCGGCCTGATGGCAAAATTGCTGCAACTGCTGGCTGGGACCACAGAATAAGGATATATAATTACCGCAAAGGAAACGCCTTAGCTGTACTTAAGTATCATCATGCCACGTGCAATGCGGTAAATTTTTCGTCTGATTGTAAACTTATGGCCTCTGCATCAGCCGACACAACTGTGGCACTGTGGGAATTGTATCCTCCAAGAACATGA 1095 0.4457 MSKRAAPDPVAVLRGHRASVTDICFHPSKPILFSGSADGELRIWDTFRRQTLSSAWLHSAAHGILALASSSSLGTNKFVSQGRDGTVKVWDFDDTGLSRIPSVTIKTNSYHFCKFSLAKNQSTGSKAGEASKDCLETEEVHTNQSCSESSEGLSYVALSGENSSEVEIWDLKSAERFARLPSSIGSNSSSVSSKGMCMALQLCVPSESQGFLNVMAGYEDGTMLWWDVRNPGVPVSSVKFHSEPVLSIGIDGSCKGGISGAADERIVMYSLDHSSGTCVVNKEITLERPGISGTSIRPDGKIAATAGWDHRIRIYNYRKGNALAVLKYHHATCNAVNFSSDCKLMASASADTTVALWELYPPRT* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4245 364 SMART WD40_4 131 170 IPR001680 GO:0005515
Mtr3g4245 364 SMART WD40_4 6 45 IPR001680 GO:0005515
Mtr3g4245 364 SMART WD40_4 277 316 IPR001680 GO:0005515
Mtr3g4245 364 SMART WD40_4 231 270 IPR001680 GO:0005515
Mtr3g4245 364 SMART WD40_4 319 358 IPR001680 GO:0005515
Mtr3g4245 364 SMART WD40_4 48 91 IPR001680 GO:0005515
Mtr3g4245 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Mtr3g4245 364 SUPERFAMILY WD40 repeat-like 9 358 IPR036322 GO:0005515
Mtr3g4245 364 Gene3D - 4 200 IPR015943 GO:0005515
Mtr3g4245 364 Gene3D - 202 363 IPR015943 GO:0005515
Mtr3g4245 364 PANTHER TRANSDUCIN BETA-LIKE 3 3 364 - -
Mtr3g4245 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Mtr3g4245 364 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Mtr3g4245 364 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Mtr3g4245 364 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Mtr3g4245 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 364 IPR001680 GO:0005515
Mtr3g4245 364 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Mtr3g4245 364 Pfam WD domain, G-beta repeat 295 316 IPR001680 GO:0005515
Mtr3g4245 364 Pfam WD domain, G-beta repeat 323 357 IPR001680 GO:0005515
Mtr3g4245 364 PANTHER - 3 364 - -
Mtr3g4245 364 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Mtr3g4245 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 364 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4245 10 92 Miscellaneous Gene Families AT5G08390 32.530 6.49e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4245 K24770 - gmx:100800482 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4245 3 56311643 56319842 Mtr3g4245 3 56311643 56319842 ECH