Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4230 ATGGAAGATGAAAACAGTTACGGTGGAAGTAGCGGTGGTTCAAACTTGGAGACATCAAAGGCAGAGAGATCAGTGTGGCTTATGAAGTGTCCTGTTGCTGTTGCTAAATCATGGCAGAATCACCCACCTTCTCAACCTCTTTCCAAAGTCGTTTTTTCTATTGATCCTCTTCTTCCTGAAGACGATCCTGCTCATCTTCAGTTTACAATGGAGATGTCTGGCACTGAAGCTGTGAATATGCCAAAAACGTATTCTTTGAATATGTTTAAAGACTTCGTTCCTATGTGCATCTTCTCTGAGACAAGCGAAGGTGACAAGGTTGCAATGGAAGGGAAAGTAGAGCATAAGTTTGATATGAAGCCACGTCATGAAAACATGGATGATTATGGAAAATTGTGCCGGGAGAGGACAAAGAAATCTATGATTAAAAATCGTCAAGTACAGATTATTGCTGATGACCGTGGAACGCACATGAGGCCAATGCCTGGAATGGTTGGCTTAGTTTCATCCAATTTTAAGGATAAGAAGAGGACACAGCCAGTCAAACAAACTGATACAAAGAGAACAAGAAGAGATCGGGGAGAGCTGGAGGATATAATGTTCAAACTATTCGAAAGACAGCCTAACTGGGCCTTGAAGCAACTTGTTCAAGAGACTGATCAACCTGCGCAATTCTTGAAAGAGATCTTGAATGAATTGTGTGTCTACAATAAAAGAGGCGCCAATCAAGGAACTTATGAGCTGAAACCTGAATACAAGAAATCTGTCGAAGATGCAAACGCTGAATAA 789 0.4132 MEDENSYGGSSGGSNLETSKAERSVWLMKCPVAVAKSWQNHPPSQPLSKVVFSIDPLLPEDDPAHLQFTMEMSGTEAVNMPKTYSLNMFKDFVPMCIFSETSEGDKVAMEGKVEHKFDMKPRHENMDDYGKLCRERTKKSMIKNRQVQIIADDRGTHMRPMPGMVGLVSSNFKDKKRTQPVKQTDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDANAE* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4230 262 PANTHER TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT 10 260 - -
Mtr3g4230 262 SUPERFAMILY "Winged helix" DNA-binding domain 188 254 IPR036390 -
Mtr3g4230 262 CDD TFIIF_beta 15 121 - -
Mtr3g4230 262 Gene3D - 188 255 IPR036388 -
Mtr3g4230 262 SUPERFAMILY Rap30/74 interaction domains 14 121 IPR011039 GO:0006367
Mtr3g4230 262 Pfam TFIIF, beta subunit N-terminus 22 137 IPR040504 -
Mtr3g4230 262 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 10 260 IPR003196 GO:0005674|GO:0006366|GO:0006367
Mtr3g4230 262 Pfam TFIIF, beta subunit HTH domain 190 253 IPR040450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4230 Mtr-Chr3 56169058 56173354 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4230 K03139 - gmx:100788473 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4230 3 56169058 56173354 Mtr3g4230 3 56169058 56173354 ECH