Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4224 ATGAAAAAGCAGCAATCAATACTCAACTTTTTCCACAAAACCATGAATTGTTGTTATTTCCCTTTCTTCATTTTACGATTGTTGTCTCTTTTGTTCCTTTTGTCTCTTTTATCTTTAGTCTCTGCCTCAAACGACACTTCTAAACTCTTCCAAGAGTGGAGCAAACAACATGGTAAAACATATCCTTCGGAAGAGGAAAAGCGTTACAGGTTCAAAGTGTTCCAAGACAATTATGCTTTTGTCTCACAACACAATGAAATGGGAAATTCCAGTTATACCCTCTCCCTCAACGCTTTCGCAGATCTTACCCACCATGAATTCAAGACCACTCGTCTAGGCTTTTCACCTTCTTCGTTGTTAAGATTCAAATTCAATCATTTTGAAGATCAACAATTCGATGATAATGGTATTTTACAAGTTCCTTCTGAGATTGATTGGAGAAAGAGTGATGCTGTTACTCCTGTCAAAGACCAAGGAAGCTGTGGTGCTTGTTGGTCATTTTCGGCTACCGGTGCTATCGAAGGGATAAATAAAATTGTGACAGGGTCTCTTGTGAGCCTTTCTGAACAAGAATTGGTAGATTGCGATAGAACTTATAATAGTGGTTGTGATGGTGGACTCATGGACTATGCATACCAATTTATCATTGACAACAAGGGGATTGACACCGAGGAAGATTACCCGTATCAAAGTCGTCAATTGCTTTGCAAAAAAGACAAGTTAAAAAGGCGTGTTGTTACGATTGATGGTTATACTGATGTGCCTCCAAATGACGAGAAAAAACTACTAAAAGCTGTTGCAGTCCAACCTGTTAGCGTAGGCATATGCGGTAGTGCAAGGGCTTTCCAGCTATACTCAAAGGGTATCTTCACTGGACCATGTTCAACTTATTTGGACCATGCAGTGTTGATTGTAGGATATGGTTCGGAAAACGGAGTAGATTATTGGATTGTAAAAAATTCTTGGGGAAAATCTTGGGGAATGAATGGTTACATACACATGTTGCGAAACACTGACAATTCTGCCGGGTTATGTGGAATCAACATGTTAGCTTCATATCCAACCAAGACCAGCCCCAATCCTCCAGTCCCACCTCCACCAGGTCCTATAAGGTGTAATTTGTTTACTTACTGTTCAAGAGGGGAAACATGCTGTTGTGCCAAGAAATTTCTTGGAATATGTTTCTCTTGGAAATGTTGTGGTAAAACTTCTGCCGTATGTTGTAAGGATGAGCGTCACTGTTGTCCTCTAGATTATCCGATTTGCGACATAGGAAGGAGCCAATGTCTTAAGAGAATTGCAAATGGGACGACAACAATGCCATCCGATAAACAAGATACTTTCCATCAGACAAGGGATTGGAGTTCTCATTGA 1374 0.4017 MKKQQSILNFFHKTMNCCYFPFFILRLLSLLFLLSLLSLVSASNDTSKLFQEWSKQHGKTYPSEEEKRYRFKVFQDNYAFVSQHNEMGNSSYTLSLNAFADLTHHEFKTTRLGFSPSSLLRFKFNHFEDQQFDDNGILQVPSEIDWRKSDAVTPVKDQGSCGACWSFSATGAIEGINKIVTGSLVSLSEQELVDCDRTYNSGCDGGLMDYAYQFIIDNKGIDTEEDYPYQSRQLLCKKDKLKRRVVTIDGYTDVPPNDEKKLLKAVAVQPVSVGICGSARAFQLYSKGIFTGPCSTYLDHAVLIVGYGSENGVDYWIVKNSWGKSWGMNGYIHMLRNTDNSAGLCGINMLASYPTKTSPNPPVPPPPGPIRCNLFTYCSRGETCCCAKKFLGICFSWKCCGKTSAVCCKDERHCCPLDYPICDIGRSQCLKRIANGTTTMPSDKQDTFHQTRDWSSH* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4224 457 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 158 169 IPR000169 -
Mtr3g4224 457 Gene3D Granulin 369 433 IPR037277 -
Mtr3g4224 457 SUPERFAMILY Granulin repeat 369 401 - -
Mtr3g4224 457 SUPERFAMILY Cysteine proteinases 45 355 IPR038765 -
Mtr3g4224 457 PANTHER OS05G0508300 PROTEIN 34 389 - -
Mtr3g4224 457 Pfam Papain family cysteine protease 140 354 IPR000668 GO:0006508|GO:0008234
Mtr3g4224 457 Gene3D Cysteine proteinases 37 357 - -
Mtr3g4224 457 CDD Peptidase_C1A 141 354 IPR039417 -
Mtr3g4224 457 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 315 334 IPR025661 -
Mtr3g4224 457 PRINTS Papain cysteine protease (C1) family signature 158 173 IPR000668 GO:0006508|GO:0008234
Mtr3g4224 457 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Mtr3g4224 457 PRINTS Papain cysteine protease (C1) family signature 315 321 IPR000668 GO:0006508|GO:0008234
Mtr3g4224 457 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 389 - -
Mtr3g4224 457 Pfam Granulin 383 430 IPR000118 -
Mtr3g4224 457 SMART Inhibitor_I29_2 50 107 IPR013201 -
Mtr3g4224 457 SMART GRAN_2 372 429 IPR000118 -
Mtr3g4224 457 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
Mtr3g4224 457 SMART pept_c1 140 355 IPR000668 GO:0006508|GO:0008234
Mtr3g4224 457 Pfam Cathepsin propeptide inhibitor domain (I29) 50 107 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4224 Mtr-Chr3 56102316 56105375 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4224 - - mtr:MTR_3g112430 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4224 3 56102316 56105375 Mtr3g4224 3 56102316 56105375 ECH