Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4220 ATGGCAACCGTGAAGAACAACATCAAGAACGTTGTTACTATTCTGTTGACATTCACCATATGCCGTATAATTGTATCTGAAGGATTAACAGTGGATCAAACATTAACGGAGATCCTCCACATAGGACTTGAAGGTGAAGTAAGCACGGAGGCCGCTAAATTAGAAGCAGCTTCATTGGATTTTGGGAGGTTAAGCAGCAAAGGAGAGACGATTGCGGTGGTTCGACCAGCGTCGGCCAATGACGTGGCAAGGGTAGTTAAAGCGGCGTATAAATGGCAGCAGTACTTTGCGGTGTCAGCGAGAGGACACGGACACTCAATAAACGGACAAGCGGATACAAGGATGAAAGGAGTGGTGATTGAAATGGGAAAAGGAGGTGTAGGAATTAAGGGTCCTCTAGTTTGGGAGAAAGAAATGTATGTGGATGTTTGGGGTGGTGAATTATGGATACATGTTCTGAAGGCAACATTGGAGTATGGGTTAGCACCTATGTCTTGGACTGATTACTTGTATTTGTCTGTGGGTGGTACTCTATCTAATGGTGGTATTAGTGGCCAAACCTTCAATCACGGTCCTCAAATCTCCAATGTTTTTGAGCTAGATGTAGTTACAGGAAAGGGTGAGGTGTTGACGTGTTCAGAAGATCGTAATTCAGACTTGTTCCATTCTGTTCTTGGTGGTCTTGGACAATTTGGAATCATCACAAGAGCTAGAATTGCTCTTCAACCAGCTCCACAAAGAGTTCGTTGGATACGAGCTTTGTACTCGAATTTTTCAACCTTTTGCAAGGACCAGGAGTTTCTCATCTCTCTACATGGGAAACCAGCGAGCCAGAGATTCGACTATGTTGAAGGTTTTGTGATAGTGGACGAAGGACTTATCAATAATTGGAGGTCTTCCTTTTTTTCACCGAGTAATCCTGTTAAAATCAGTTCCCTTAATGCTGACGGAGGTGTTTTGTACTGTTTGGAGGTGACCAAAAACTACCACCAAGGAAATGCTGATTCTGTTGATGAGGAGATACAAGCTCTATTGAAAAAGTTAGATTTTATAGACACATCAGTGTTCACAACGGACGTGCCTTATGTGGATTTCCTGGATCGTGTACATAAGGCAGAACTCAAACTTAGATCCAAGGGTTTATGGGACGTTCCCCATCCATGGCTCAATCTTTTTGTTCCAAAATCAAGGATAGAAGATTTTGATAAGGGTGTATTCAAGGGCATTTTGGGAAATAAGACAAGTGGGCCTATTCTCATCTACCCTATGAACAAAAACAAGTGGGACCATCGGAGCTCGGCGGTGACACCAGACGAGGAGGTGTTTTACCTGGTGGCATTTCTGAGATCAGCTTTGGATGCTGAGACACTGGAGCACCTGACTAATCAGAACCGTCAGATCCTGGGATTCTGTCATGATTCGAAGATAGGGGTTAAACAGTACCTACCCCATTACACAACAATGCAGGAGTGGATGGACCACTTTGGAGATAAATGGACCCAATTCAATGCCATGAAGATGCAATTCGACCCTCAACGAATCTTAGCAACAGGCCAGCGAATATTTCATTTTGAAGTCATTACTAAGGATGACATGTAA 1599 0.4346 MATVKNNIKNVVTILLTFTICRIIVSEGLTVDQTLTEILHIGLEGEVSTEAAKLEAASLDFGRLSSKGETIAVVRPASANDVARVVKAAYKWQQYFAVSARGHGHSINGQADTRMKGVVIEMGKGGVGIKGPLVWEKEMYVDVWGGELWIHVLKATLEYGLAPMSWTDYLYLSVGGTLSNGGISGQTFNHGPQISNVFELDVVTGKGEVLTCSEDRNSDLFHSVLGGLGQFGIITRARIALQPAPQRVRWIRALYSNFSTFCKDQEFLISLHGKPASQRFDYVEGFVIVDEGLINNWRSSFFSPSNPVKISSLNADGGVLYCLEVTKNYHQGNADSVDEEIQALLKKLDFIDTSVFTTDVPYVDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPKSRIEDFDKGVFKGILGNKTSGPILIYPMNKNKWDHRSSAVTPDEEVFYLVAFLRSALDAETLEHLTNQNRQILGFCHDSKIGVKQYLPHYTTMQEWMDHFGDKWTQFNAMKMQFDPQRILATGQRIFHFEVITKDDM* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4220 532 PANTHER CYTOKININ OXIDASE 5-RELATED 13 523 - -
Mtr3g4220 532 Gene3D - 248 481 IPR016170 -
Mtr3g4220 532 ProSiteProfiles PCMH-type FAD-binding domain profile. 66 244 IPR016166 GO:0071949
Mtr3g4220 532 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 245 522 IPR015345 GO:0009690|GO:0019139|GO:0050660
Mtr3g4220 532 SUPERFAMILY FAD-linked oxidases, C-terminal domain 245 522 IPR016164 GO:0003824|GO:0050660
Mtr3g4220 532 Gene3D - 57 522 IPR016167 -
Mtr3g4220 532 SUPERFAMILY FAD-binding/transporter-associated domain-like 44 243 IPR036318 GO:0050660
Mtr3g4220 532 Pfam FAD binding domain 72 213 IPR006094 GO:0050660
Mtr3g4220 532 PANTHER GULONOLACTONE OXIDASE 13 523 - -
Mtr3g4220 532 Gene3D - 122 246 IPR016169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4220 Mtr-Chr3 56045690 56052993 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4220 K00279 - gmx:100790584 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4220 3 56045690 56052993 Mtr3g4220 3 56045690 56052993 ECH