Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4209 ATGATCTCTCAGTTCTTCGTACTTTCTCAAAGAGGCGACAACATCGTCTTTCGCGATTATCGTGGTGAAGTCCAAAAGGGAAGCGCTGAAACATTTTTCCGCAAAGTTAAATTCTGGAAAGAAGACGCTGATGGAGATGCTCCACCTGTTTTTAATGTAGATGGTGTGAACTACTTCCACGTGAAGGTTGCTGGGTTATTATTTGTTGCTACAACTAGAATCAATGTTTCTCCTTCTCTTGTTTTGGAACTTTTACATAGAACTGCACGTGTCATCAAAGATTACCTTGGTGTTCTTAATGAAGACTCTTTTCGAAAGAATTTCGTCCTTGTTTATGAACTTCTTGATGAAGTCATTGATTTTGGTTATGTGCAAACAACATCTACTGAGGTTTTGAAGTCATATGTTTTCAATGAGCCAATTGTGATCGAGAGTTCACAAATGCCCCTTGGCCCCGCTTCCATTTTTATGCAAGGGACCAAACGAATGCCAGGTACTGCTATTACAAAATCTGTTGTTGCTAATGAACCTGGTGGTAGGAAGAGGGATGAGATTTTTGTTGATGTGATTGAAAAAATAAGTCTCACATTCAATTCCAGTGGATTTATACTCACCAGTGAGATTGATGGTACCATTCAAATGAAGAGTTATCTTACTGGTAACCCAGAGATTCGACTTGCTCTCAATGAAGACCTGAGTATAGGAACAAGTGATTACAGAGGTTCTGGTGCTGTGATTTTAGATGATTGTAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATATTGACCGAACTTTATCGTTGGTACCACCGGATGGTGAATTTCCTGTCATGAATTATCGTATAACTCAAGCATTTAAGCCCCCCTTTCGTATCAATGCATTGATTGAAGAAACAGGACCACTCAAGGCTGAAGTGACCATTAAAGTGCGAGCTGAATTCAACTCAAGCATCAATGCTAATACCGTTCTTGTACGGATGCCACTTCCTGCATTTACAGCTCGTGTTAATTTTGAGTTAGAACCTGGAGCAGTTGGACACACCACTGATTTTAAGGAAGCAAATAAAAAACTGGAATGGGGACTAAAAAAGGTTGTTGGTGGATCTGAACATACTTTACGTGCAAAGCTGACATTTTCGCAAGAATTACATGGAAATATTATGAAAGAAGCTGGGCCTCTTAGTATGACATTCACTATACCTATGTACAATTCTTCAAGGCTTCAGGTGAAGTACTTGCAAATAGCAAAGAAGTCAAAAGCTCATAATCCATATCGATGGGTTAGATATGTAACCCAGGCAAACTCGTATGTTGCTCGGTTGTAA 1329 0.3943 MISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDADGDAPPVFNVDGVNYFHVKVAGLLFVATTRINVSPSLVLELLHRTARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVIESSQMPLGPASIFMQGTKRMPGTAITKSVVANEPGGRKRDEIFVDVIEKISLTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSDYRGSGAVILDDCNFHESVHLDSFDIDRTLSLVPPDGEFPVMNYRITQAFKPPFRINALIEETGPLKAEVTIKVRAEFNSSINANTVLVRMPLPAFTARVNFELEPGAVGHTTDFKEANKKLEWGLKKVVGGSEHTLRAKLTFSQELHGNIMKEAGPLSMTFTIPMYNSSRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4209 442 Pfam Clathrin adaptor complex small chain 1 132 IPR022775 -
Mtr3g4209 442 ProSiteProfiles Mu homology domain (MHD) profile. 182 441 IPR028565 -
Mtr3g4209 442 PIRSF AP_complex_mu 1 442 IPR001392 GO:0006886|GO:0016192|GO:0030131
Mtr3g4209 442 Gene3D - 1 141 - -
Mtr3g4209 442 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Mtr3g4209 442 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Mtr3g4209 442 PRINTS Clathrin coat assembly protein signature 247 274 IPR001392 GO:0006886|GO:0016192|GO:0030131
Mtr3g4209 442 PRINTS Clathrin coat assembly protein signature 360 371 IPR001392 GO:0006886|GO:0016192|GO:0030131
Mtr3g4209 442 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 442 - -
Mtr3g4209 442 CDD AP4_Mu_N 3 143 - -
Mtr3g4209 442 CDD AP-4_Mu4_Cterm 177 442 - -
Mtr3g4209 442 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Mtr3g4209 442 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 181 441 IPR036168 -
Mtr3g4209 442 Pfam Adaptor complexes medium subunit family 181 441 IPR028565 -
Mtr3g4209 442 Gene3D Mu homology domain, subdomain B 289 441 - -
Mtr3g4209 442 PANTHER AP COMPLEX SUBUNIT MU 2 442 - -
Mtr3g4209 442 Gene3D Mu homology domain, subdomain B 181 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4209 Mtr-Chr3 55958651 55963500 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4209 K12402 - gmx:100800985 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4209 3 55958651 55963500 Mtr3g4209 3 55958651 55963500 ECH