Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4205 ATGTCAGAACTTCTTTGCAATGATGAAAGAAGAGAGAGTTCAGAGGATGATAAGTGGAAAAGAATTGGCAGTCTTAAAAAGAAAGCAATAAATGCATCATGCAAATTAAGGCATTCTCTTAAGAAGAAAAGAAGCAGTAAAAGTAGTGGCAGTAGGAGCAATTCCTTGTCCATTGAGGATGTTCGACAAGTTGAGGAGCTAAATGCAGTGGATGCATTTCGACAAACACTTCTATTAGACAACTTGCTTCCTTCAATACATGATGACTATCATATGTTATTGAGATTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCTTATGTGGGCCAACATGATCCAATGGAGGAAAGACTATGGTACAGATACAATTATAGAGGATTTTGATTTCAAGGAGTTACAAGAAGTCCAGAAATATTATCCACATGGTTATCATGGTGTGGATAAGGAGGGAAGACCTGTTTATATTGAGAGGCTAGGAAAAGTTGATCCCAATAGGCTTATGCAAGTAACTACCATGGAAAGATATTTGAGATACCATGTGCAGGGTTTTGAGAAAACATTTTCTGTCAAATTTCCAGCTTGCTCTATAGCTGCTAAGAGACGCATAGGTTCCAGTACAACAATTTTGGATGTTCAAGGCGTGGGTTTCAAAAACTTCACCAAGTCTGCTCGAGAGCTCATCATTCAGCTGCAGAAGATTGATAGTGATTACTATCCTGAAACACTTCATCAAATGTTTATCATCAATGCTGGTCCTGGTTTTAAGCTTCTATGGAACACAGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATGTTCTTGGAAACAAGTTCCACAGTAAATTACTTGAGATTATCGATGCGAGTGAGCTACCGGAATTTCTAGGCGGTAGTTGCACCTGTGTAGATCATGGTGGCTGTATGACATCCGATAAAGGGCCATGGCAAGACCCAAACATTTTAAAGATGGTTCTTAGTGGTAAAGTGCAGTGTTCTAAACAAATCGTAACAATTTCCAACGACGGGGGGAGGGTGATTGAATGTGATAAAACATCTTTTCCAAAGATAAGAAGTGGCTATACATCTACTGGAGAATCAGTATCTGAAGTTGAAGATATCACCTCTCCCAAAGCATGTGGGAATTCTATGAACCCTATACTGACTCATGTCCAAGAAGAGGCAAGTGATGGTACATTAATCACGAGGTTACACCAAACAGAAATGTTTGATGAGTGTGTTCCCATGGTTGACAAGACTATTGATGTTGGACCAAAGGAGAAGCAAGCAGCACCACGAAACTCATTTGGCTCAAAAGAAAATCTGCTTTTGGTGACCAGGACTGTTACAGTGGGCGTCGTTTTTGCCCTTTTTGCTTTTGTTAGAACATTAGCATTTCGTGTGACAAAGGGAGTAAAACGGGAGGAACTTGCTACCGGATTCACAAAGCCAAACTCCTCCTCATCTTCTACCTTAAAACGCCTCAGTGAGCTTGAAAAAAATGTTGAGATACTACAGTCAAAACTTAATGTCATGCCAAGTGAGAAAGAGGAGCAGCTGAATGCTGCAGTTTATCGTGTGGATGCACTGGAAGCAGAGCTCATTGCTACAAAGAAGGCTTTGTTTGAGGCTTTAATGAGACAAGAAGAACTTTTGGCATACATAGACAGTCGGGAAAAAAGCAAATTCAAGCAGTGCTGCTGGTAA 1719 0.3991 MSELLCNDERRESSEDDKWKRIGSLKKKAINASCKLRHSLKKKRSSKSSGSRSNSLSIEDVRQVEELNAVDAFRQTLLLDNLLPSIHDDYHMLLRFLKARKFDIEKAKLMWANMIQWRKDYGTDTIIEDFDFKELQEVQKYYPHGYHGVDKEGRPVYIERLGKVDPNRLMQVTTMERYLRYHVQGFEKTFSVKFPACSIAAKRRIGSSTTILDVQGVGFKNFTKSARELIIQLQKIDSDYYPETLHQMFIINAGPGFKLLWNTVKTFLDPKTTSKIHVLGNKFHSKLLEIIDASELPEFLGGSCTCVDHGGCMTSDKGPWQDPNILKMVLSGKVQCSKQIVTISNDGGRVIECDKTSFPKIRSGYTSTGESVSEVEDITSPKACGNSMNPILTHVQEEASDGTLITRLHQTEMFDECVPMVDKTIDVGPKEKQAAPRNSFGSKENLLLVTRTVTVGVVFALFAFVRTLAFRVTKGVKREELATGFTKPNSSSSSTLKRLSELEKNVEILQSKLNVMPSEKEEQLNAAVYRVDALEAELIATKKALFEALMRQEELLAYIDSREKSKFKQCCW* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4205 572 Gene3D - 23 121 - -
Mtr3g4205 572 Pfam CRAL/TRIO, N-terminal domain 90 113 IPR011074 -
Mtr3g4205 572 Coils Coil 492 512 - -
Mtr3g4205 572 PRINTS Cellular retinaldehyde-binding protein signature 92 114 - -
Mtr3g4205 572 PRINTS Cellular retinaldehyde-binding protein signature 261 280 - -
Mtr3g4205 572 Pfam CRAL/TRIO domain 140 302 IPR001251 -
Mtr3g4205 572 SUPERFAMILY CRAL/TRIO N-terminal domain 65 130 IPR036273 -
Mtr3g4205 572 SMART sec14_4 134 305 IPR001251 -
Mtr3g4205 572 Gene3D - 122 332 IPR036865 -
Mtr3g4205 572 SUPERFAMILY CRAL/TRIO domain 134 328 IPR036865 -
Mtr3g4205 572 CDD SEC14 135 302 IPR001251 -
Mtr3g4205 572 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 8 568 - -
Mtr3g4205 572 SMART CRAL_TRIO_N_2 89 114 IPR011074 -
Mtr3g4205 572 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 134 308 IPR001251 -
Mtr3g4205 572 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 8 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4205 Mtr-Chr3 55900379 55904357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4205 69 299 Acyl Lipid Metabolism Gene Families AT5G47730 28.333 1.51e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4205 - - gmx:100811161 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4205 3 55900379 55904357 Mtr3g4205 3 55900379 55904357 ECH