Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4200 ATGAAGCATATGTTCTTTCTATTTTTCATAGTTCTCTATGTGATCTCACTACTCAACGTAGAAGCAGACGATGAGTTTGTGAAAACAAGAGGAGTGCAGCTTATGCTGAACGGAAGCCCTTATTATGCCAATGGTTATAATGCATATTGGTTAATGTATTTTGCTTCTGATCCATCTCAAAGGAACAAAGTCTCATCAACTTTTCAAGAGGCTTCATATCATGGACTTAACATAGCAAGAACATGGGCTTTCAGTGATGGTGGTTATAAACCCCTTCAATACTCTCCTGGATCCTACAATGAGGAAATGTTCCAGGGGTTGGACTTTGTACTAGCTGAAGCCAGAAAATATGGGATAAAGGTAATTTTGAGTTTGGTGAACAACTATGAGGATTTTGGAGGGAAGAAACAATATGTGGAGTGGGCAAGGAGTCAAGGCCAATCCATAAACTCTGAAGATGATTTCTTCACTAATCCTGTTGTGAAGGGATACTATAAAAATCACATTAAGACAGTGGTTACAAGACGCAACAGCCTGAGTGGAGTTGCTTACAAAGACGACCCTACAATAATGGCTTGGGAGCTTATGAATGAGATTAGATGCCCTTCAGATCACTCAGGAAATTCGGTTCAGGGTTGGATTAGTGAGATGGCATCTTACTTGAAATCCATAGATGGAAACCACTTGCTTGAAGCTGGTTTGGAGGGTTTCTATGGACAGTCAAAGACAGAGTCTAATCCTAACTTCCAAGTTGGAACCGATTTCATTGCAAACAACCAAATCCCCACCATCGATTTTGCTACACTACACTCCTACCCGGATCAATGGCTATCTAATTCAGGCTATGAGGACCAAATATCTTTCTTACGTGGCTGGCTCAATGAGCATATCCAAGATGCACAGAACATCCTTCACAAGCCACTTCTATTTGCAGAGTTTGGCATTTCATCTAAAAACTTGGGCAGCAGCAATAACTCAACAAAGAGGGATCAGTTTTTCAATACTGTATATTCAGCAATATATTCATCAGCAAGTGGTGGTGGAACTGCTGTTGGTGGCTTATTTTGGCAACTTCTTGCTGAAGGAATGGATTCTTTCCGAGACGATTACGAGGTGATACTAGCCGAGAGCCCCTCAACAGCTACCTTGATTGCTCAAGAGTCTCAAAAGCTCAAGCGAATTCGCAAGATGTATGCCAGACTCAAAAACATTGACAAGTGGAACAAGACATAG 1233 0.412 MKHMFFLFFIVLYVISLLNVEADDEFVKTRGVQLMLNGSPYYANGYNAYWLMYFASDPSQRNKVSSTFQEASYHGLNIARTWAFSDGGYKPLQYSPGSYNEEMFQGLDFVLAEARKYGIKVILSLVNNYEDFGGKKQYVEWARSQGQSINSEDDFFTNPVVKGYYKNHIKTVVTRRNSLSGVAYKDDPTIMAWELMNEIRCPSDHSGNSVQGWISEMASYLKSIDGNHLLEAGLEGFYGQSKTESNPNFQVGTDFIANNQIPTIDFATLHSYPDQWLSNSGYEDQISFLRGWLNEHIQDAQNILHKPLLFAEFGISSKNLGSSNNSTKRDQFFNTVYSAIYSSASGGGTAVGGLFWQLLAEGMDSFRDDYEVILAESPSTATLIAQESQKLKRIRKMYARLKNIDKWNKT* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4200 410 Coils Coil 384 404 - -
Mtr3g4200 410 PANTHER - 4 409 IPR045053 GO:0004553
Mtr3g4200 410 Pfam Cellulase (glycosyl hydrolase family 5) 44 332 IPR001547 GO:0004553|GO:0071704
Mtr3g4200 410 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 4 409 - -
Mtr3g4200 410 Gene3D Glycosidases 22 395 - -
Mtr3g4200 410 SUPERFAMILY (Trans)glycosidases 26 382 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4200 Mtr-Chr3 55846579 55850957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4200 5 410 Glycoside Hydrolase AT5G66460 61.985 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4200 K19355 - gmx:100794126 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4200 3 55846579 55850957 Mtr3g4200 3 55846579 55850957 ECH