Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4149 ATGGCCGTTTCAACCACTTTCTCCGGTCCCAAATTGGAGTCACTATTCCTCAAATCTTCTTCGAGGCTACCCACTCCCACCCATTTATCAGTTTTTGGGAAACCCAGAACTACTTTCATTCAAAAAGGAATTATTCGATGTGATGCTCAAAATTCTGATCAAACTATTGCTAGCACCACCACCCTTTCTGCTCTTGAGCTCCTCAAAACTTCTGCAGCTGATAGGTACACAAAGGAAAGGAGCAGCATTGTCGTCATTGGGCTCAGTGTGCACACTGCTCCGGTAGAAATGCGTGAAAAACTTGCCATTCCGGAAGCAGAATGGCCTAGAGCTATTGCAGAGTTGTGCAGTCTCAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTCGTCGCTCTGTCCCAACACCGTGGTGTCAAAGAGGTCATGGAATGGATGTCAAAAACAAGTTCCGTTCCTGTTTCAGAGCTTTGCGAGCACCGATTTTTACTTTACAACAAAGATGCCACACAGCATCTTTTTCAAGTATCAGCTGGTCTTGAGTCTCTTGTATTGGGAGAAGGTCAAATTCTTGCTCAGGTTAAGCAAGTTGTCAAAGTTGGACAAGGAGTTAACGGCTTTGGAAGAAACATTAGTGGTCTATTCAAGCACGCAATAACTGTCGGAAAAAGGGTTAGAGCAGAGACTAATATTGCTGCTGGGGCAGTTTCTGTGAGTTCAGCCGCTGTGGAGTTGGCCTATATGAAGCTACCTGAAGCCTCACATGATAATGCCAGGATGCTGATTATCGGTGCTGGGAAGATGGGAAAGCTGGTGATCAAACATTTGGTTTCGAAAGGTTGCACAAGGATGGTTGTTGTCAATAGGACCGAGGAGAGAGTTGCTGCAATACGCGAAGAACTGAAGGATATTGAAATAATTTACAAACCTCTTTCAGAAATGCTCTCTTGTGTTTGTGAAGCAGATGTAGTATTCACCAGTACAGCATCAGAAACCCCATTATTCATGAAAGATGATGTCAAGGACCTTCCTCCAGCAAGTCAAGATGTTGGAGGCCTTCGCCTTTTCATTGACATTTCTGTTCCTCGAAATGTTGGTTCATGTGTCTCAGATATTGAATCTGTTCGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGATCGGCTTAGAAAAGCAATGGAAGCGCAGGCGATCATTGGTGAAGAGTTGAAACAATTTGAAGCTTGGAGAGACTCACTGGAAACTGTTCCTACCATAAAAAAATTGAGAGCCTATGCTGAAAGGATCAGGGTTGCTGAGCTTGAGAAATGCTTGGGTAAGATGGGTGATGATATCTCAAAGAAGACGCGGAAAGCTGTGGATGATCTTAGTCGGGGTATTGTGAATAGGATGCTTCATGGTCCAATGCAACATTTAAGGTGTGATGGGAGTGACGACCGAACTCTAACTGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAGCCTAGAGACTGAAATATCTGTTTTGGAGCAGAAAGTTCGAGCTAAGGTGGAACAAAACCAGAAGTGA 1596 0.4392 MAVSTTFSGPKLESLFLKSSSRLPTPTHLSVFGKPRTTFIQKGIIRCDAQNSDQTIASTTTLSALELLKTSAADRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKTSSVPVSELCEHRFLLYNKDATQHLFQVSAGLESLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRAETNIAAGAVSVSSAAVELAYMKLPEASHDNARMLIIGAGKMGKLVIKHLVSKGCTRMVVVNRTEERVAAIREELKDIEIIYKPLSEMLSCVCEADVVFTSTASETPLFMKDDVKDLPPASQDVGGLRLFIDISVPRNVGSCVSDIESVRVYNVDDLKEVVAANKEDRLRKAMEAQAIIGEELKQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCLGKMGDDISKKTRKAVDDLSRGIVNRMLHGPMQHLRCDGSDDRTLTETLENMHALNRMFSLETEISVLEQKVRAKVEQNQK* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4149 531 Pfam Shikimate / quinate 5-dehydrogenase 252 393 IPR006151 -
Mtr3g4149 531 PANTHER GLUTAMYL-TRNA REDUCTASE 1 531 - -
Mtr3g4149 531 ProSitePatterns Glutamyl-tRNA reductase signature. 179 202 IPR018214 GO:0008883
Mtr3g4149 531 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 82 238 IPR036343 GO:0008883|GO:0033014|GO:0050661
Mtr3g4149 531 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 407 511 IPR015896 GO:0008883|GO:0033014|GO:0050661
Mtr3g4149 531 Gene3D - 242 394 - -
Mtr3g4149 531 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 531 - -
Mtr3g4149 531 TIGRFAM hemA: glutamyl-tRNA reductase 83 493 IPR000343 GO:0008883|GO:0033014|GO:0050661
Mtr3g4149 531 Gene3D - 81 241 IPR036343 GO:0008883|GO:0033014|GO:0050661
Mtr3g4149 531 Coils Coil 294 314 - -
Mtr3g4149 531 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 86 236 IPR015895 GO:0008883|GO:0033014|GO:0050661
Mtr3g4149 531 CDD NAD_bind_Glutamyl_tRNA_reduct 83 405 - -
Mtr3g4149 531 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 241 401 IPR036291 -
Mtr3g4149 531 Hamap Glutamyl-tRNA reductase [hemA]. 82 509 IPR000343 GO:0008883|GO:0033014|GO:0050661
Mtr3g4149 531 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 405 494 IPR036453 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4149 Mtr-Chr3 55363761 55366605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4149 K02492 - gmx:100782247 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4149 3 55363761 55366605 Mtr3g4149 3 55363761 55366605 ECH