Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4146 ATGGCCGCACCACCACCCACCAAAGACCAAGTCCTCTCTCTCCTCGCCGCCGCCAACAACCACGGCGACATCTCCGTCAAGACCACTTCCCTCAAACAAGCCAAAGACCTTCTTCTCTCCATCGACCCCTCTCTCGCTGCAGACCTTTTCCCTTATCTCCTCGAACTTCAGTCTTCTCATCAACCTCTCGTTCGCAAATTGCTCATTCAGATAATTGAAGAGATTGGTTTTAGAGCCGTTCAACATTCTCCTACATTAATTTCTTCATTATTAACGTTTTTAAGAGACACTGATGCAACTGTCGTAAAGCAGTCTATTATTAGTGGAACAAACATCTTCTGTGCTTGTTTTGAGGAGTTGATTTTGCAGTTTCAACAATGTGGTAAAGTTGAGAGGTGGTTAGAAGAGATTTGGATGTGGATGTTTAAGTTCAAGGAGGCTGTTTTTGAGATTGCTCTTGAGGGTGGTTCTGTTGGAATAAAGTTGCTGGCACTGAAATTCTTGGAGATTTTTGTATTACTTTTTACATCTGACATCAGTGATTCTGAGAAATCAGCTACTGAAGGAGTCAGGCAAGCTGTTAATATCTCATGGTTGGTGGGTTCTCACCCTGTTCTTGATCCAATGGTGCTTATGACAGAGGCAAATAGGACAATTGGCATTTTATTAAAATTGTTGCAGTGTGCTGGCAATACCCCCGGTTGCTTGACAATTACTGTTGTGAATTGTTTAGCAGCTATTGCAAGGAAAAGGTCACAACATTATGATACTATCCTTTCAGCATTACTTGATTTTGATCCAAATGTTCAAACAGTGAAAGGATGTCATGTTCCCAGTATTCAGTACTCTTTAAGAACAGCTTTTTTAGGTTTTCTAAGATGCACTTATTCTCCAATAATAGAGTCAAGAGAAAGACTGATAAGGAGCCTGCGAGCCATGAATGCAGGCGATGCAGCTGATCAGGTAATTCGGCAAGTAGACAAAATGATTAAAAGTGCTGATCGCTTTATCCGTGATGCTCGAGTTAACAAGGATGATCAACCATCAAATCAGTTGCCCGTTTCAGGGGAGTCATCTAGGAAAAGACCTGTTCCTCATGATAATGAACAATTGGCCAATGGTCATGAGGCGATTGCTAAGCGGATTCGTTCTGGTCCTGACTCTGACTTTACCTTACCTGCTCAAGTTAATGATTCTGGGAGGGATCATAGCTCCGTTAACGGAGTGTCACCTAATGTTCCTGTTTTGGAAAGTGAACTAACTGCTGTGGAGCAAATGATTGCCGTTATTGGTGCTTTGATTGCTGAAGGAGAAAGAGGCGCCAAATCTCTTGAAATACTTATATCACAGATTCATCCTGATCTATTGGCTGATATTGTCATAGCTAATATGAAGCACCTGCCTAAGGCACCCCCACCACTAGCAAGGCTTGAGAGTCCATCAGTAACTCGACCAGTAGGTTCCCTCGTCAGTCAATCGCATGTTATAACAACATCTGCTTCAATGAGTTCTGTCCAATCCTTGACTGTTTCTGCCCAAGCACAGGTCTCTTCAACTACAGCCATTTCTGCTGCCACTACTTCATCACCATCCGACACATCTAATTTCAGTAACCTTCCTGCTGATTCTAAACGCGATCCACGCCGGGACCCTCGTCGCCTTGATCCGCGGCGTGGAGCAATAACTCCTGGAGGAGCAGCTGTCTCAGTTACAGACGATACTGCGGCCACACATTTAGAATCTGAGGATCCCGTGTCTTTTATTAAACCTGCCTCACATCATGTTGCAAGCACCGATGATGATATCCAATCAAATTTAACAATCAAAATAGAAAATGATGACATGATCTCCGAAGGCCCTCCAGTTCCAGGACCTGACCGGGTTAGTCCCAAAACAGAGACTCTTGAAGGGCCTGGAGATCACCAGATTATGGAAGCAAATGCTTCTATGGATCCTGAGGTCTATTCCACTGATTCAAAAGATGAGAATCTGAGTACAGCAAATCTTTTGGACGATAATGAAACAAATGGGATAGATTCATCATCTATTTTAGAGTTTGATCAGTTTTCTGTTGACGTACAAGTGTCACCCACATCAGAAGATACCTGTCTGGAGTTGCCACAGCTTCCACCTTACATCCAACTATCCCAAGAACAGGAAAGTAAGGTGAAACACATGGCTATTAGCCACATAATAGAGTCATACAATCATTTGCAAGGGGCAGATTGTCAACAGTTTTGCATGCCACTACTAGCTAGACTTGTAGCTCAGGGGCATGAACTTGTTCTGCATGTCCTGTACCATCTTCACTCCTTGATGATATTGGATTCAGCAGGAAACACTTCATCTTCTGCTGTTTTATATGATAACTTTCTCTTGGGAGTGGCCAAAACTGTATTGGATTCTTTTCCAGCTTCAGACAAGTCTTTTAGCAAACTTCTTGGTGAAGTTCCGTTTCTGCCTGAATCTGCCTTGAAGATTTTGGATGATCTATGCTATTCTGATGTTGTTGATCATGATGGAAAAATTATCCGTGACATTGAGCGTGTGACTCAAGGCCTTGGTGCTATCTGGAGTTTAATTTTGGGTCGTCCACAAAACCGACAAGGCTGCTTAGGAATAGCATTGAAGTGTGCTGTTCATCCACAGGACGAGATTCGAGCTAAAGCTATTCGGCTGGTGACAAATAAGCTCTTTCAGCTTAGTTACATAGCTGAAGATGTTGAGAAATTTGCGACAAAAATGCTTCTCTCTGCAGTAGATCACGAAGTTTCAAATGCAGCGCAATCTGGACCTACTGAACAAAGAACAGAGGCACAGGTCGAAAGTCTTGAAATAAGTGGTACTTCACAGGTTAAAGAGCCCAAAAATGACCCTGCTGGAGTTGCTAAACCATCAAGTCAAAGTGTTTCATCTATATCGTTTTCTGAGGCACAACGCCTCATTTCTTTATTTTTTGCTCTATGTACAAAGAAACCCAGTCTTCTACAGATTGTATTTGATGTCTATGGGCAAGCCTCAAGAACTGTAAAGCAGGCTTTTCATCGCCACATTCCTAATCTTGTGAGGGCCCTAGGGCAATCTTATTCTGAATTGCTCCATATCATATCTGATCCACCAAAAGGAAGTGAAAATCTTCTGACACTGGTGCTGCAAATATTGACTCAAGACACAACACCGTCTTCTGATTTGATATCTACCGTTAAACATTTATATGAAACCAAGTTTAGAGATGTTACAATTCTTGTTCCATTATTGTCATCGCTCTCCAAAACGGAGGTTTTACCAATTTTCCCCCGACTTGTGGACCTTCCATTGGAAAAGTTTCAAAGGGCACTTGCCCACATACTACAGGGTTCAGCTCATACAGGTCCAGCTTTAACACCTGTAGAAGTTTTGGTTGCAATCCATGGAATTGTTCCTGAGAAAGATGGCCTAGCACTTAAGAAGATAACAGATGCTTGCTCAGCTTGTTTTGAACAACGTACAGTGTTCACTCAGCAGGTTTTGGCCAAGGCATTGAATCAGATGGTTGATCAAACACCACTGCCTCTGCTTTTCATGAGAACGATTATTCAGGCCGTTGATGCTTTTCCTGCACTGGTTGATTTTGTCATGGAGATACTCTCAAAACTTGTGACCAAACAGGTGTGGCGTATGCCAAAACTTTGGGTTGGTTTCTTAAAATGTGTATATCAGACGCAGCCACGTTCTTTTCATGTATTATTGCAGTTACCGCCTCAACAACTGGAAAGTGCACTCAACAAGCATGCCAATCTCAGAGGTCCCCTTGCTTCTTATGCCAACCAACCAACTGTAAAATCTTCACTTAGTAGATCAACTTTAGTTGTTCTCGGCCTTGCAAATGAAACACACGTGCAGCAACATTTACCGACATCATTGCACCATTCTGAGACAAGTACTTCCGTTAGTGGGGCAACTCTGACATGA 3951 0.4267 MAAPPPTKDQVLSLLAAANNHGDISVKTTSLKQAKDLLLSIDPSLAADLFPYLLELQSSHQPLVRKLLIQIIEEIGFRAVQHSPTLISSLLTFLRDTDATVVKQSIISGTNIFCACFEELILQFQQCGKVERWLEEIWMWMFKFKEAVFEIALEGGSVGIKLLALKFLEIFVLLFTSDISDSEKSATEGVRQAVNISWLVGSHPVLDPMVLMTEANRTIGILLKLLQCAGNTPGCLTITVVNCLAAIARKRSQHYDTILSALLDFDPNVQTVKGCHVPSIQYSLRTAFLGFLRCTYSPIIESRERLIRSLRAMNAGDAADQVIRQVDKMIKSADRFIRDARVNKDDQPSNQLPVSGESSRKRPVPHDNEQLANGHEAIAKRIRSGPDSDFTLPAQVNDSGRDHSSVNGVSPNVPVLESELTAVEQMIAVIGALIAEGERGAKSLEILISQIHPDLLADIVIANMKHLPKAPPPLARLESPSVTRPVGSLVSQSHVITTSASMSSVQSLTVSAQAQVSSTTAISAATTSSPSDTSNFSNLPADSKRDPRRDPRRLDPRRGAITPGGAAVSVTDDTAATHLESEDPVSFIKPASHHVASTDDDIQSNLTIKIENDDMISEGPPVPGPDRVSPKTETLEGPGDHQIMEANASMDPEVYSTDSKDENLSTANLLDDNETNGIDSSSILEFDQFSVDVQVSPTSEDTCLELPQLPPYIQLSQEQESKVKHMAISHIIESYNHLQGADCQQFCMPLLARLVAQGHELVLHVLYHLHSLMILDSAGNTSSSAVLYDNFLLGVAKTVLDSFPASDKSFSKLLGEVPFLPESALKILDDLCYSDVVDHDGKIIRDIERVTQGLGAIWSLILGRPQNRQGCLGIALKCAVHPQDEIRAKAIRLVTNKLFQLSYIAEDVEKFATKMLLSAVDHEVSNAAQSGPTEQRTEAQVESLEISGTSQVKEPKNDPAGVAKPSSQSVSSISFSEAQRLISLFFALCTKKPSLLQIVFDVYGQASRTVKQAFHRHIPNLVRALGQSYSELLHIISDPPKGSENLLTLVLQILTQDTTPSSDLISTVKHLYETKFRDVTILVPLLSSLSKTEVLPIFPRLVDLPLEKFQRALAHILQGSAHTGPALTPVEVLVAIHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTIIQAVDAFPALVDFVMEILSKLVTKQVWRMPKLWVGFLKCVYQTQPRSFHVLLQLPPQQLESALNKHANLRGPLASYANQPTVKSSLSRSTLVVLGLANETHVQQHLPTSLHHSETSTSVSGATLT* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4146 1316 MobiDBLite consensus disorder prediction 927 954 - -
Mtr3g4146 1316 Pfam Symplekin/PTA1 N-terminal 98 321 IPR032460 -
Mtr3g4146 1316 Gene3D - 4 343 IPR011989 -
Mtr3g4146 1316 Pfam Symplekin tight junction protein C terminal 1078 1256 IPR022075 -
Mtr3g4146 1316 MobiDBLite consensus disorder prediction 340 372 - -
Mtr3g4146 1316 MobiDBLite consensus disorder prediction 523 570 - -
Mtr3g4146 1316 SUPERFAMILY ARM repeat 5 1212 IPR016024 -
Mtr3g4146 1316 MobiDBLite consensus disorder prediction 611 638 - -
Mtr3g4146 1316 MobiDBLite consensus disorder prediction 542 557 - -
Mtr3g4146 1316 MobiDBLite consensus disorder prediction 523 541 - -
Mtr3g4146 1316 MobiDBLite consensus disorder prediction 1296 1316 - -
Mtr3g4146 1316 PANTHER SYMPLEKIN-RELATED 19 1316 - -
Mtr3g4146 1316 MobiDBLite consensus disorder prediction 927 967 - -
Mtr3g4146 1316 PANTHER SYMPLEKIN-RELATED 19 1316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4146 Mtr-Chr3 55309663 55328358 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4146 K06100 - gmx:100789876 2004.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4146 3 55309663 55328358 Mtr3g4146 3 55309663 55328358 ECH