Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4132 ATGACTAAGAGACCAAAGAAATCAGAATCAAATAGGAGACCAAAAAGAAGAAAGCCATCAGGTGTTTTTTCACCGTTGGATGTATCTTCTAGCGTTGTTTTCCGTTTGCTATGCCCTGCTAGTAAAATTGGGGGTGTAATTGGTAAAGGTGGTTCTATTATATCACAAATTCGCCATGAAACCGGTGTGAAAGTTAAAATTGAAGAGCCTGTTCCGGGTTGCGAAGAAAGGGTTATAACTTTTTTAAAGGAGAGTGAAGAAGGTAGTGCTGAGCAAGGAAAGGAGGTTAATGATAATGATGAGAGTGAAAGCAAGGTGAAGGATGATGAGGAGAAAGGGAATGGCGATGATAATGAAGATAAAGATTCTGTTTCTGTTGAAGATTCGCAGAGCGAGAAGGTGAATTCAAATCCAACTATTATGAGGGCTGTAATGTTAGTTTTTGAGAGGGTGGCTGAGGATGAAGGTGGTGATGAAAGTAAAAAAGGTTACTTTGGTTTACGGCTACTTATCCTTTCTAATCAAGTTGGATGCATTTTGGGAAAAGGTGGCAGTGTGATAAAGAGAATGTCAGCTGAAAGTGGGGCGCAGATTCGAATCCTTCCTAAAGAAGAAATTCCCGCGTGTGCGTCGGATTCTGACGAGTTAGTTCAGATCACAGGAGGAGTAGAAGTTGTCAGGAGAGCTCTGCAATCTGTTTTTCAGCAGCTTGTGGAGAATTCACCTCGGGATCATGAATCTCTGCCTACCAATCTTACCGGGCCGTCATCTCATTCATATGGTCAATTCCCACCAAATAAACGCACTTTCGCTGGTCAAGGAGCATCTTTTGCTACTGGGCCTAATGAAATTCCTGTTTTCCATTCTGCTCCTATGATTCCCAAATTTCATGAAGGTGCCATCCTTGGTCGCATGAGGCCTCCACCGGAAATACTTACTTTCCGTTTACTGTGTCCTTCCGAAAGTGTAGGAAATTTAATTGGCAAGGGTGGATCAATCATAAAGATGCTGCAACAAGAGACAGCCAGTGAAATCAAGGTCATAGAAGCCATTCCGGGTTCAGAGGACTGCATTATCATCATATCTGGTCCAGCGCACCCAGATGATAGAATATCTCCTGTGCAAGAGGCTATATTTCGTGTGCAAAATAGAATATCCAGGGCTATGCTTGATAGTAAAGAGCACAGTATGTTAGCAAGGGTCATTGTTTCTTCCAAACATATAGGTTGTCTCCTAGGGAAGGGTGGTTCCATCATAGCTGAAATGAGGAATTTATCAGGTGCCCATATTCGTATGCTGGGAAAGGATAAGGGTCCAAAGTGTGTTTCAGAAGATGATGAAGTAATTCAGGTGAGTGGAGTAATTGAGGCAGTGCATGATGCTCTTTTGCAAATAACTACGAGATTAAGAAACAATTTCTTTCGCGATGCATTTCCGTCTGCCAATTTTCCTTCAAATTCTGCATTCCTTGATCAACATTCTCCATTCCCACCTTATTTGGGAAGGCGGGGACTTTCACCTCCTGGAATGTATTCTGACCTAGGTCCGCGACATCCACATGCTGATTTTCCCCTCGATGATCACCCTCCTTTTATGAATAATATGTATAGATCAGGCATTCCTCCTCTCATATCTGAAAGGAAGCCTTGGGGTCCTAAGGGGATACTTGAAGGTGGTGGACATATGGGCTTGCCAGAATTTGCAGGAGGTCCCCGAAGAATTTCTGGATTTGCAGGAGGGAGCCAACCGATTATCACAAGCACCACTGTTGAAGTTGTTGTTCCTCGAGCTCTGGTGGCTGAAATATACGGGGAAAATGGTGAATGCCTGAAACAGATACTCCAGATCTCTGATGCAAATGTTATTATTACTGATCCAATCCCTGGAGCTGTGGAAACTAAAATTATAATATCTGGAACCCCGGAGCAAACTAATGCTGCACAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCTGGTTGA 1989 0.4309 MTKRPKKSESNRRPKRRKPSGVFSPLDVSSSVVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITFLKESEEGSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLVFERVAEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVFQQLVENSPRDHESLPTNLTGPSSHSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAPMIPKFHEGAILGRMRPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISPVQEAIFRVQNRISRAMLDSKEHSMLARVIVSSKHIGCLLGKGGSIIAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRDAFPSANFPSNSAFLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDDHPPFMNNMYRSGIPPLISERKPWGPKGILEGGGHMGLPEFAGGPRRISGFAGGSQPIITSTTVEVVVPRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQTNAAQSLIQAFVMSERESG* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4132 662 ProSiteProfiles Type-1 KH domain profile. 31 96 - -
Mtr3g4132 662 CDD PCBP_like_KH 400 466 - -
Mtr3g4132 662 MobiDBLite consensus disorder prediction 83 135 - -
Mtr3g4132 662 ProSiteProfiles Type-1 KH domain profile. 164 233 - -
Mtr3g4132 662 Gene3D K Homology domain, type 1 586 659 IPR036612 GO:0003723
Mtr3g4132 662 CDD KH-I 589 652 - -
Mtr3g4132 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 305 384 IPR036612 GO:0003723
Mtr3g4132 662 Gene3D K Homology domain, type 1 310 389 IPR036612 GO:0003723
Mtr3g4132 662 Gene3D K Homology domain, type 1 28 98 IPR036612 GO:0003723
Mtr3g4132 662 MobiDBLite consensus disorder prediction 83 128 - -
Mtr3g4132 662 ProSiteProfiles Type-1 KH domain profile. 311 378 - -
Mtr3g4132 662 MobiDBLite consensus disorder prediction 1 25 - -
Mtr3g4132 662 MobiDBLite consensus disorder prediction 240 265 - -
Mtr3g4132 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 28 81 IPR036612 GO:0003723
Mtr3g4132 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 587 656 IPR036612 GO:0003723
Mtr3g4132 662 SMART kh_6 30 101 IPR004087 GO:0003676
Mtr3g4132 662 SMART kh_6 586 656 IPR004087 GO:0003676
Mtr3g4132 662 SMART kh_6 310 386 IPR004087 GO:0003676
Mtr3g4132 662 SMART kh_6 163 238 IPR004087 GO:0003676
Mtr3g4132 662 SMART kh_6 395 470 IPR004087 GO:0003676
Mtr3g4132 662 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 6 526 - -
Mtr3g4132 662 MobiDBLite consensus disorder prediction 1 19 - -
Mtr3g4132 662 ProSiteProfiles Type-1 KH domain profile. 587 651 - -
Mtr3g4132 662 Pfam KH domain 589 652 IPR004088 GO:0003723
Mtr3g4132 662 Pfam KH domain 400 465 IPR004088 GO:0003723
Mtr3g4132 662 Pfam KH domain 168 231 IPR004088 GO:0003723
Mtr3g4132 662 Pfam KH domain 313 365 IPR004088 GO:0003723
Mtr3g4132 662 Pfam KH domain 34 80 IPR004088 GO:0003723
Mtr3g4132 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 390 476 IPR036612 GO:0003723
Mtr3g4132 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 239 IPR036612 GO:0003723
Mtr3g4132 662 CDD PCBP_like_KH 313 382 - -
Mtr3g4132 662 CDD PCBP_like_KH 167 234 - -
Mtr3g4132 662 Gene3D K Homology domain, type 1 394 472 IPR036612 GO:0003723
Mtr3g4132 662 Gene3D K Homology domain, type 1 165 241 IPR036612 GO:0003723
Mtr3g4132 662 ProSiteProfiles Type-1 KH domain profile. 396 465 - -
Mtr3g4132 662 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 6 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4132 Mtr-Chr3 55106593 55111110 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4132 K21444 - gmx:100785136 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4132 3 55106593 55111110 Mtr3g4132 3 55106593 55111110 ECH