Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4117 ATGGTGGTTTCCGACAGCCCTAACGGTGGCTCTACACCCCCGCCGCCACAACAAGAACAAGCTAACAAAGATAGATTCACAAAACCTATCTCAATTGCTGGCCCCACCGAAGCTGATCTCAATCGTAACACCGAATTGGAGAAGTTTTTGGTTGATTCGGGGCTTTATGAGTGCAATGAAGAAGCTGCAAGTAGAGAAGAGGTTCTTCGCCGCCTTGATCAGATCGTGAAAAGCTGGGTGAAGCAGCTGACTCGCCAACGAGGCTACACAGATCAGATGGTTGAGGATGCAAATGCCGTCATTTTCACTTTTGGCTCTTACCGACTAGGGGTTCATGGACCTGGAGTGGACATAGACACTTTGTGCATCGGTCCTTCCTATGTAAATCGAGAGCAAGACTTCTTCATCATTTTGCACAACATCCTTGCTGAAATGGAAGAAGTTACTGAACTTCAACCAGTACCTGATGCACATGTCCCAGTAATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCAAGCATATCTATTTTGGTTGTGCCAGAAGACTTGGATATCTCAGATGGTTCCGTTCTGTATGATGTTGATGAACAAACTGTTCGAAGTCTTAATGGTTGCCGAGTGGCGGATCAAATTCTTAAACTTGTTCCAAATGTCGAGCACTTTCGAACTACATTGAGATGTTTAAAGTTTTGGGCTAAAAGACGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGAGGAGTAAATTGGGCTATTTTAGTTGCTCGAGTTTGCCAGCTTTACCCTAATGCAATCCCTAGCATGTTGGTTTCTAGATTCTTTAGGGTCTATTCACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCCCTATAGAAGAGAATGAACTGCATTTACCTATATGGGATCCTCGCAGAAACCATAGGGACAGGTATCACCTTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTCTCGACAAGCACTCTTCGTGTTATGATGGAACAGTTCTGCTATGGCAACAAGATTTGTGACGAAATTGAGCTTAACAAATCACAGTGGAGTGCGCTTTTTCAGCCATATGTCTTTTTTGAGGCTTACAAAAACTATTTACAAGTAGACATCATTGCATTAGATGCTGATGATTTACTTTTGTGGAGAGGTTGGGTAGAATCCCGACTAAGACAGCTAACCTTGAAGATAGAGCGAGATACAAGTGGGATGCTGCAGTGTCATCCTTATCCACATGAGTATGCAGACACGTCCAAGCCTTGTGCGCATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTAAGGGGTCAAGAGGGACAGCAATTTGATATTCGTGGAACAGTTGATGAGTTCAGACGAGAAATTATTATGTATGTATACTGGAAGCCGGGGATGGAAATTTATGTTTCTCATGTTCGTCGAAAGCAGCTCCCTGCATTTGTTTTTCCAGATGGTTACAAACGCACTCGAATGCCTAGGCATATAAACCATGCGGCTGAGAAAATGGGTGATGATACGACAAAGTGCAACTCTGGATCCAGCTCTTCTGAAAGGTCCGTCAAGAGGAAGAAGAACCCTGAAATGATGGATGTTAAGCCAGATAAACCAGAGAAGCGGATATCTGTTAGCCCACAGAGGCTAGAGTGTGTTTCACCTGAAAGTTGTACTAGTAAATTGGGTGGTACTCCTCAAATGAGTATCGAGTGTATTGAAGGGGTTAGGCTAGATGGCTCAACAACAAATGATACCGACAATAATTGTGAAATCAAGTCATCCGATGGACTCTCAGGAAGTGGTACAATTATTGACGTAGGTGACATGCAGATAAATGAAACAAGTTTTGTTGACTCCACACATGATAGGCTGAAATCAAGGGCTTTAGAAGTTCAGAATGAGAATGGAGTCAATGAGGACAAAGCTCGGGACATGACTTTTGTTTGCTTGGAAAGGGCAGAAACTATATCTACAAAAAGCTTGCCAAATTGGGAAGAGGGTGCTGTTGGAATTGATCAACAACTAGACAAAGCTTGTAATTTCACAAGGGCTGAATGTTCGGATTATGCACCAATTGCCAGCACCCAGAACCTCAATTGCGAGATGTCAGACTCGGGAGTGTATAAGTTGAAGATGAGGCTAGGAGGATAA 2190 0.4311 MVVSDSPNGGSTPPPPQQEQANKDRFTKPISIAGPTEADLNRNTELEKFLVDSGLYECNEEAASREEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISILVVPEDLDISDGSVLYDVDEQTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQLYPNAIPSMLVSRFFRVYSQWRWPNPVMLCPIEENELHLPIWDPRRNHRDRYHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFCYGNKICDEIELNKSQWSALFQPYVFFEAYKNYLQVDIIALDADDLLLWRGWVESRLRQLTLKIERDTSGMLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRREIIMYVYWKPGMEIYVSHVRRKQLPAFVFPDGYKRTRMPRHINHAAEKMGDDTTKCNSGSSSSERSVKRKKNPEMMDVKPDKPEKRISVSPQRLECVSPESCTSKLGGTPQMSIECIEGVRLDGSTTNDTDNNCEIKSSDGLSGSGTIIDVGDMQINETSFVDSTHDRLKSRALEVQNENGVNEDKARDMTFVCLERAETISTKSLPNWEEGAVGIDQQLDKACNFTRAECSDYAPIASTQNLNCEMSDSGVYKLKMRLGG* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4117 729 Pfam Nucleotidyltransferase domain 98 174 IPR002934 GO:0016779
Mtr3g4117 729 MobiDBLite consensus disorder prediction 516 560 - -
Mtr3g4117 729 PANTHER POLY A POLYMERASE 1 627 - -
Mtr3g4117 729 Gene3D - 27 367 - -
Mtr3g4117 729 SUPERFAMILY Nucleotidyltransferase 25 218 IPR043519 -
Mtr3g4117 729 Pfam Poly(A) polymerase central domain 27 368 IPR007012 GO:0004652|GO:0043631
Mtr3g4117 729 MobiDBLite consensus disorder prediction 532 557 - -
Mtr3g4117 729 SUPERFAMILY PAP/OAS1 substrate-binding domain 220 369 - -
Mtr3g4117 729 CDD NT_PAP_TUTase 65 219 - -
Mtr3g4117 729 Gene3D Poly(A) polymerase predicted RNA binding domain 371 487 - -
Mtr3g4117 729 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 372 497 IPR011068 GO:0003723|GO:0016779|GO:0031123
Mtr3g4117 729 MobiDBLite consensus disorder prediction 1 26 - -
Mtr3g4117 729 Gene3D Beta Polymerase, domain 2 57 213 IPR043519 -
Mtr3g4117 729 PANTHER NUCLEAR POLY(A) POLYMERASE 4 1 627 - -
Mtr3g4117 729 Pfam Poly(A) polymerase predicted RNA binding domain 372 431 IPR007010 GO:0003723|GO:0043631
Mtr3g4117 729 Pfam Poly(A) polymerase predicted RNA binding domain 432 504 IPR007010 GO:0003723|GO:0043631
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4117 Mtr-Chr3 54947810 54954042 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4117 K14376 - gmx:100802620 1234.55