Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4112 ATGGGGGTTTGTCATTACGCGGTTCCGTCATGCTTCGTCCCATCGCTGTCGTGTGCAGCTTCAACTCTCTTTCGTTCTCGCTTCAGACCCACCATCCGATGCTGCACCACTCTATCCAATACCTCTCCACGGACTCCTACTCCATCCCCAACCTCTATCAAGAAACGAGTTGTCTCCGGAGTTCAACCTACCGGTTCAATTCACCTTGGAAACTACTTCGGTGCCATCAAGAATTGGGTTGCCCTTCAGCATGTGTACGATACACTTTTCTTCATTGTGGATCTGCATGCGATTACATTACCTCATGACTCACAGCAATTATCTAAGGATACAAAGTCAACCGCAGCCATTTACCTGGCATGTGGGGTGGATCCTTCAAAGGCTTCAGTTTTTGTCCAGTCTCATGTCCGTGCACATGTAGAATTGATGTGGCTGCTAAGTTCTATAACACCAATCGGCTGGCTAAACAGAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGGGATGATGAAGTTGGGGTTGCTCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTTCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTGACTTAGCTGAACGGGTTAATAATTTATACGGAGGAAGAAAGTGGAAGAAATTAGGCGGGCGAGGAGGTACTATATTTAAGGTTCCAGAGCCCCTTATACCTCCAACCGGAGCTCGGATTATGTCCCTAACCGATGGCCTGTCGAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCGTTTCCAAGCTTGGAAATCGACAATCCTGAAAGGCCTGAATGTAATAATCTTCTCTCTATATACCAGCTCGCTTCTGGAAAAACAAAAGAGGAAGTTGCGCATGAATGCCAAGACATGAACTGGGGCACATTCAAACCTCTTTTAACAGATGCCTTGATTGATCATTTGCATCCCATTCAGGTTCGCTATGAGGAACTCATGTCAGATTCAGGTTATTTAGATAAAGTATTAGGAGAAGGTGCTAAAAATGCAGCAGATATAGCGGATGCTACTCTTCATAATGTTTACCAAGCAATGGGATTTTCGAGGAGACAATGA 1191 0.4391 MGVCHYAVPSCFVPSLSCAASTLFRSRFRPTIRCCTTLSNTSPRTPTPSPTSIKKRVVSGVQPTGSIHLGNYFGAIKNWVALQHVYDTLFFIVDLHAITLPHDSQQLSKDTKSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSITPIGWLNRMIQFKEKSRKAGDDEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGTIFKVPEPLIPPTGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPSLEIDNPERPECNNLLSIYQLASGKTKEEVAHECQDMNWGTFKPLLTDALIDHLHPIQVRYEELMSDSGYLDKVLGEGAKNAADIADATLHNVYQAMGFSRRQ* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4112 396 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 63 72 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mtr3g4112 396 CDD TrpRS_core 56 344 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mtr3g4112 396 Hamap Tryptophan--tRNA ligase [trpS]. 54 393 IPR024109 GO:0004830
Mtr3g4112 396 PANTHER BNAA04G15180D PROTEIN 49 392 - -
Mtr3g4112 396 Pfam tRNA synthetases class I (W and Y) 56 347 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mtr3g4112 396 PRINTS Tryptophanyl-tRNA synthetase signature 67 83 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mtr3g4112 396 PRINTS Tryptophanyl-tRNA synthetase signature 117 136 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mtr3g4112 396 PRINTS Tryptophanyl-tRNA synthetase signature 194 215 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mtr3g4112 396 PRINTS Tryptophanyl-tRNA synthetase signature 259 269 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mtr3g4112 396 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 49 392 - -
Mtr3g4112 396 TIGRFAM trpS: tryptophan--tRNA ligase 54 392 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Mtr3g4112 396 SUPERFAMILY Nucleotidylyl transferase 55 392 - -
Mtr3g4112 396 Gene3D HUPs 57 391 IPR014729 -
Mtr3g4112 396 Gene3D - 252 362 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4112 K01867 - gmx:100780314 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4112 3 54901963 54914107 Mtr3g4112 3 54901963 54914107 ECH