Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4111 ATGGATGAGATTGAGATTGAGATTGAGGAGGGACTGGAGGGTGCCCCCGAAATAGAGGGATTTCAGATCGATCAGTTCCTCTACGAAGTCGAAGGAGAAGAAGAAGAAGAAGAATTCGATCACCCGTTTTTTCACTCTCCATCTACTTCTCCCACTTCTCAAGATCCACCTAATAATGGTATTGGCATTGGCTCATCCGATGAATTCACTTTCAATACAAGTATCGCCTCTTTGCATACATATCTTGGTGATGTTGAAGACACGCGCCATAGAACTGCTTTCTTGGATGCTGGTGCTACATTCAACCTTCCACTCTTTTCTCTCCAAGGAGTTGTACTCTTTCCTGGGGCCACTCTTCCCCTTAGGGTTACTGTTCCCCGTTTTGTGGCTGCTATTGAGAGAGCTTTGAGTCAAGTTGACGTTCCTTACACCATTGGTGTGGTTCGGGTTCACAGAGATACCGAAAGTTTTACGATGCAGGCGGCAAGCACTGGGACAACTGCTGTGATTCGACAGTATGGGCGCCTAGAGGATGGTTCACTAAATGTGGTTACCCGTGGACAACAACGATTTCATCTAAGGCGGTCTTGGAACGACGTTGACGGAGTGCCTTACGGAGAGATCCAAATTATTGAGGAAGATCTACCATTGAGAACTCCAAGGGGCATTTTTGGCAAATCAGCATCATCAAGTAATATGCCTTGCAGCCATGTTAAGATGCATGGCTTAAAAAATGGACAAAACAATTCAGATGCAAATCCAGATGAGGATTTTGAGAGTGAGCTTTCACCAACGGAAAGGAAGGCCCATCTATCAGCCATTGGTTCCAGTTCTGCGTCGGGTATGGCGGATGTATCAGCGAACAGCAGCGGTGTTAACTTCATGCATAACTCAGATCAGGAAATAAGATCCAATTTGGATTTGAGCATTGAAAAATGTTCCACTTCTGGAAAGCAGTCATCCAAAGAAGAGCTTAATAGATGCTACAAGAATATACAATCGTATAAGATTTCAAAAGCATTCTGGCCCCACTGGGTTTATCGTATGTACGACTCCTATTGGCTTGCACAAAGGGCAGCAGATATGTGGAAGCAAATAGTTGGGGTACCTAGTATGGATAGTCTCGTCAAGAAGCCTGATGTTTTATCATTTCATATCGCCAGTAAAATACCTGTTTCTGAATCTACAAGGCAGGACCTTTTGGATATCGATGGCATCACATATAGGTTGCGCAGGGAAATTGAACTACTAGATAGCATTGATCTTGTCCGATGTAGAATATGCCAGACTATAATTGCAAAACGAAGTGATATGTTGGTGATGTCAAATGAGGGTCCTCTTGGTGCCTATGTGAATCCTGGTGGTTATGTCCACGAGATAATGACTCTTTACAAGGCCAATGGCTTATCTCTCGTTGGGCACGCAGTTACAGAATACAGCTGGTTTCCTGGATATGCATGGACAATCGCTAAATGTGCTACATGTAGAACCCAAATGGGATGGCTTTTTACAACCACCAACAAAAAACTGAGGCCTGATTCATTTTGGGGTATTCGGAGCTGTCAAGTTGCAGAAGAAATACGCAGAAACCTTTAG 1596 0.4398 MDEIEIEIEEGLEGAPEIEGFQIDQFLYEVEGEEEEEEFDHPFFHSPSTSPTSQDPPNNGIGIGSSDEFTFNTSIASLHTYLGDVEDTRHRTAFLDAGATFNLPLFSLQGVVLFPGATLPLRVTVPRFVAAIERALSQVDVPYTIGVVRVHRDTESFTMQAASTGTTAVIRQYGRLEDGSLNVVTRGQQRFHLRRSWNDVDGVPYGEIQIIEEDLPLRTPRGIFGKSASSSNMPCSHVKMHGLKNGQNNSDANPDEDFESELSPTERKAHLSAIGSSSASGMADVSANSSGVNFMHNSDQEIRSNLDLSIEKCSTSGKQSSKEELNRCYKNIQSYKISKAFWPHWVYRMYDSYWLAQRAADMWKQIVGVPSMDSLVKKPDVLSFHIASKIPVSESTRQDLLDIDGITYRLRREIELLDSIDLVRCRICQTIIAKRSDMLVMSNEGPLGAYVNPGGYVHEIMTLYKANGLSLVGHAVTEYSWFPGYAWTIAKCATCRTQMGWLFTTTNKKLRPDSFWGIRSCQVAEEIRRNL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4111 531 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 423 512 IPR004910 -
Mtr3g4111 531 PANTHER PROTEIN CEREBLON 24 523 - -
Mtr3g4111 531 MobiDBLite consensus disorder prediction 226 282 - -
Mtr3g4111 531 PANTHER CEREBLON 24 523 - -
Mtr3g4111 531 Pfam ATP-dependent protease La (LON) substrate-binding domain 102 418 IPR003111 -
Mtr3g4111 531 ProSiteProfiles Lon N-terminal domain profile. 103 419 IPR003111 -
Mtr3g4111 531 Gene3D Peptide methionine sulfoxide reductase. 417 530 - -
Mtr3g4111 531 Gene3D - 83 211 IPR046336 -
Mtr3g4111 531 SMART lon_5 102 419 IPR003111 -
Mtr3g4111 531 ProSiteProfiles CULT domain profile. 420 527 IPR034750 -
Mtr3g4111 531 MobiDBLite consensus disorder prediction 45 63 - -
Mtr3g4111 531 Gene3D - 351 416 - -
Mtr3g4111 531 SUPERFAMILY PUA domain-like 102 418 IPR015947 -
Mtr3g4111 531 MobiDBLite consensus disorder prediction 37 63 - -
Mtr3g4111 531 CDD CRBN_C_like 423 519 IPR034750 -
Mtr3g4111 531 MobiDBLite consensus disorder prediction 226 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4111 Mtr-Chr3 54893606 54897968 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4111 K11793 - gmx:100779918 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4111 3 54893606 54897968 Mtr3g4111 3 54893606 54897968 ECH