Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4087 ATGGCTTTCACAGCCTCGCCAGCTATAATAAGAAACCCCATTTCAAAGCAAAATATGGTTGTTTGTGACATGCTTGATAACACTTGTAGGAAAAAGTTTTCATTTCGAAACAAGGGCATCTATAAAGGCCAACATAATCTTCGAGATCATTTGACCGTCACAAATGTTGTTAGTCCATCGCGTGTGATTGCTCCACCTCCACCACCGGAGAAACGTTCAGAGACCACCGGCGACCACCAACACCATGTTGCATGGACTAGTATCCCTCAAGAGAGATGGGAAGGAGAACTGCTTGTTCAAGGACATATTCCACTCTGGCTGAAAGGAACGTACATAAGGAATGGCCCAGGTATGTGGAACATAGGGGACTACAACTTCAGGCACCTCTTTGACGGGTACGCCACCTTGGTCGGCCTTCACTTCGAGGATGGGCGGTTAGTAGCCGGCCATCGGCAAGTTGAATCTCAAGCTTATCAAGCAGCAAAGAAAAATCAGAAGATATGTTATCGTGAATTTTCTGAAGTCCCTAAGGCTGAAAATTTCTTAGCCTATGTAGGGGAGCTAGCAAACCTTTTCTCCGGTTCCTCACTTACCGACAATGCCAATACAGGCGTGGTGAAGCTCGGTGATGGGAGGGTGGTTTGTTTGACGGAGACACAAAAAGGGTCAATAGTGATAGACCCTGACACATTGGAGACAATTGGAAAGTTTGACTACAGTGATTCTTTGGGGGGTCTTATTCACTCTGCACATCCCATTGTCACGGATAACGAGTTTTTAACATTAATCCCTGACCTTGTAAAACCAGGGTACTTAGTGGCGAGGATGGAACCTGGCTCTAATGAGAGGAAGGTTATTGGACGGGTCGATTGTCGGGGCGGTACTTCACCCGGTTGGGTTCATTCCTTTCCCGTTACTGAACACTATGTTATTGTGCCTGAAATGCCATTGAGGTATTGTGCTCAGAATTTGCTCAGGGCTGAACCAACTCCGTTGTACAAATTTCAGTGGCATCCTGAGTCCAAAGCTTTTATGCATGTTATGTGCAAGACTAGTGGAAAGATTGTGGCAAGTGTGGAAGTGCCTTTGTTCGTTACTTTCCATTTCATAAATGCATATGAAGAGGAAGATGAAGATGGGAGGGTAACTGCTGTTATTGCTGACTGCTGTGAGCACAATTCAAACACCGACATTCTTGACAAGCTTAGATTACAGAACCTTCGCTCATTTAACGGCGAAGATGTTCTGCCAGATGCTAGGGTTGGTCGGTTTAGAATACCACTGGATGGAAGTCCATATGGAACATTAGACGCAGCATTAGACCCAAATGAACATGGGAAAGGCATGGACATGTGCAGCATAAACCCTAATTATCTAGGGTTGAAGTACAGATATGCCTATGCTTGTGGAGCACAGCGCCCTTGTAACTTCCCCAACACCCTCACCAAGATCGATCTACAATCAGAAAGGGCTAAGAACTGGTATGAAGAAGGTGCTGTACCCTCGGAACCATTTTTTGTGCCTCGACCAGGAGCAACAAAGGAAGATGATGGTGTGGTAATCTCCATAATCAGTGAGAAAAATGGAGAAGGATATGCTTTGGTTTTAGATGGTTCCACTTTTGAAGAGATTGCCAGAGCTAAGTTCCCTTATGGACTTCCATATGGGTTGCATGGATGTTGGGTTCCAAAACAGTAA 1698 0.4523 MAFTASPAIIRNPISKQNMVVCDMLDNTCRKKFSFRNKGIYKGQHNLRDHLTVTNVVSPSRVIAPPPPPEKRSETTGDHQHHVAWTSIPQERWEGELLVQGHIPLWLKGTYIRNGPGMWNIGDYNFRHLFDGYATLVGLHFEDGRLVAGHRQVESQAYQAAKKNQKICYREFSEVPKAENFLAYVGELANLFSGSSLTDNANTGVVKLGDGRVVCLTETQKGSIVIDPDTLETIGKFDYSDSLGGLIHSAHPIVTDNEFLTLIPDLVKPGYLVARMEPGSNERKVIGRVDCRGGTSPGWVHSFPVTEHYVIVPEMPLRYCAQNLLRAEPTPLYKFQWHPESKAFMHVMCKTSGKIVASVEVPLFVTFHFINAYEEEDEDGRVTAVIADCCEHNSNTDILDKLRLQNLRSFNGEDVLPDARVGRFRIPLDGSPYGTLDAALDPNEHGKGMDMCSINPNYLGLKYRYAYACGAQRPCNFPNTLTKIDLQSERAKNWYEEGAVPSEPFFVPRPGATKEDDGVVISIISEKNGEGYALVLDGSTFEEIARAKFPYGLPYGLHGCWVPKQ* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4087 565 MobiDBLite consensus disorder prediction 60 81 - -
Mtr3g4087 565 Pfam Retinal pigment epithelial membrane protein 92 563 IPR004294 GO:0016702
Mtr3g4087 565 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 77 564 - -
Mtr3g4087 565 PANTHER BETA-CAROTENE DIOXYGENASE 77 564 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4087 Mtr-Chr3 54656981 54660472 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4087 K17913 - gmx:100814148 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4087 3 54656981 54660472 Mtr3g4087 3 54656981 54660472 ECH