Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4070 ATGGCATCTATTAGAAGAACCTTGTCTCCTGTTCCTCGACCCGCAACTGCAGCAAATGTAGATGTCTGTTCAGTATCTTCCCCGTTGTCTAAGTCCTCACCTAGCCCCCAGAAGTTTTTTCCATCCTATGGATTTTTACCTTCTTCATTCACCTCACCGGACTCCAGTGCTTTTTTGCTTGGTGTTTTCTTCCCAAGATCTTTCAGGAATATTGAGAAATCAAAGCCTAAGGGTCAGCTTTGGAGAAAGGTGCTTTTCCATTTTTTCATTTGTTTTATGGTTGGTGTTTCTATTGGCCTCATCCCGCTCGCATCAACAAACTTGTCTTTGAATCTCATCTCAAGAAATCAAGGTTTCTCTTTTGAGGTAAAAAAATTCCAGTCACTCGAAAATGTGAAGATAAATGATACACCATTAGTTGATGAGGTTGTGAAGTTTGATGCTACTTTGATTTCCGCAGTACAAGAACAAGAACTAACAGACGGTGTAACGTATAATATATCAGACAGCCAATTCGGTGATGAATCATATTTGGAGTCTCAAAAGCTTTTCATAATTGTCACACCGACTTACAATCATCTATATCAAGCTTATTATTTGCATCACTTGTCACAAACTTTGAAATTGGTTTCCCCTCCTTTGTTGTGGATTGTTGTTGAGATGAATTCTCAATCTGATGAAACTGCTGACATTTTGACAAGTAGTGGCATTATGTATAGACATCTCATATGCAAAATGAATCTAACCAACACAAGCCATAGGAGCATTCTTATGAGAAATGTTGCAATAGCTCACATTGAAACTCATCGCCTCAATGGAATTGTTTATTTTGCAAACAATGATAACATCTATTCGGTTGAACTCTTCCAGCAAATGAGAGAAATAAGGCGATTTGGAACATGGACTGTTGCAAGATTATCAAAGGATAGAAGCGGCATTCTCTTGCAAGGGCCCATTTGTAATGGAAGTGAAGTGATTGGATGGCACACAAATAATGAATCAGGTGGGAATTCTAAAAGATTTCATGCTGAAATGCAAGGCTTCGCCTTCAATAGTACAATACTATGGGATCCAAAGAAGTGGCACCGACCGTCTCTTAAACCTATCAGGCAGCTCGAATCAGTCAAGGAAAATTTGTGGGTTAGCACATTGATTGAGCAGATTGTTAAAGATGAAAGTGAAATGGAGGGCCTAATGAACGACTGCTCGAGAGTTATGGTTTGGAATATTGATCTCGAGTCATCTTATTCCTTCTATCCTAAAAAATGGATTACAGAGAACAACCTAGACGTCATTTGGAATTTTCCACTTGTGTGA 1317 0.3888 MASIRRTLSPVPRPATAANVDVCSVSSPLSKSSPSPQKFFPSYGFLPSSFTSPDSSAFLLGVFFPRSFRNIEKSKPKGQLWRKVLFHFFICFMVGVSIGLIPLASTNLSLNLISRNQGFSFEVKKFQSLENVKINDTPLVDEVVKFDATLISAVQEQELTDGVTYNISDSQFGDESYLESQKLFIIVTPTYNHLYQAYYLHHLSQTLKLVSPPLLWIVVEMNSQSDETADILTSSGIMYRHLICKMNLTNTSHRSILMRNVAIAHIETHRLNGIVYFANNDNIYSVELFQQMREIRRFGTWTVARLSKDRSGILLQGPICNGSEVIGWHTNNESGGNSKRFHAEMQGFAFNSTILWDPKKWHRPSLKPIRQLESVKENLWVSTLIEQIVKDESEMEGLMNDCSRVMVWNIDLESSYSFYPKKWITENNLDVIWNFPLV* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4070 438 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 184 430 IPR029044 -
Mtr3g4070 438 CDD GlcAT-I 182 413 IPR005027 GO:0015018|GO:0016020
Mtr3g4070 438 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 1 432 - -
Mtr3g4070 438 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 432 IPR005027 GO:0015018|GO:0016020
Mtr3g4070 438 SUPERFAMILY Nucleotide-diphospho-sugar transferases 183 428 IPR029044 -
Mtr3g4070 438 Pfam Glycosyltransferase family 43 203 413 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4070 Mtr-Chr3 54486262 54489641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4070 1 432 Glycosyltransferase AT1G27600 42.130 3.73e-112 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4070 K20869 - gmx:100808765 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4070 3 54486262 54489641 Mtr3g4070 3 54486262 54489641 ECH