Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4064 ATGCAGGCATCAAGGGCGAGGCTGTTCAAGGAGTACAAAGAAGTGCAACGAGAGAAGACAGCTGATCCTGATATTCAACTCGTTTGTGATGATTCCAACATTTTTAAATGGACAGCTCTAATCAAGGGACCTTCAGAGACTCCGTTTGATGGGGGTGTTTTCCAGCTTGCATTTTCTGTTCCAGAGCATTATCCTTTACAACCTCCTCAAGTTCGGTTTTTGACTAAAATATTTCACCCCAACGTGCATTTTAAGACCGGAGAGATTTGCCTAGATATCTTGAAAACTGCTTGGAGCCCCGCATGGACTCTGCAATCTGTTTGTAGAGCTATAATTGCATTGATGGCTCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGTAATCTTCTACGTTCAGGTGATGTTAGAGGCTATCAGTCCATGGCAAGAATGTACACTAGGCTTGCAGCAATGCCAAAAAAAGGCTGA 474 0.4388 MQASRARLFKEYKEVQREKTADPDIQLVCDDSNIFKWTALIKGPSETPFDGGVFQLAFSVPEHYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKTAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4064 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 157 - -
Mtr3g4064 157 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 2 157 - -
Mtr3g4064 157 CDD UBCc 7 148 IPR000608 -
Mtr3g4064 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
Mtr3g4064 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Mtr3g4064 157 SMART ubc_7 6 153 - -
Mtr3g4064 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Mtr3g4064 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Mtr3g4064 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4064 Mtr-Chr3 54409383 54413375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4064 7 123 Miscellaneous Gene Families AT3G17000 35.772 2.59e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4064 K10689 - sind:105164758 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4064 3 54409383 54413375 Mtr3g4064 3 54409383 54413375 ECH