LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g4060	ATGGCGAACGACGAAGAACGTCTCCAAGCTCAAGACCTAGGCTACGATCCCAACTTCGTTCCCGATCCAGTCAAAACCTTTGTTGTTCACCTCTACCGTCACATCAGAGAGAAGAATGTATACGAGATCCACCAAATGTACGAAACCTCTTTCCAAACCCTATCTGAGCGTTTCTTCAAGGACACACCATGGCCCTCCGTAGACGCCGTCGCTCAATACGTCGACAACGACCATGTCTTCTGTCTTCTCTACCGTGAGATGTGGTTTCGCCACCTCTATGCTCGTCTCACTCCTACGCTTCGTCAGAGAATCGATTCGTGGGATAATTACTGTAGTCTCTTTCAGGTTGTTCTTCATGGTGTTGTCAATATGCAGCTTCCGAATCAATGGCTTTGGGATATGGTTGACGAGTTTGTTTATCAGTTTCAAAGCTTTTGTCAGTATCGTGCTAAAATGAAGAACAAAACTGAACAAGAAATTGCTCTCTTGAAACAGTTCGATCAGGCTTGGAATGTTTTTGGTGTTCTGAACTTCTTGCAAGCGCTAGTTGAGAAGTCAACGATTATTCAGATACTCGAGCAGGAGAAGGAAGGGCTTGAGCAATTCACTTCAAATGATGGCTATGATTACAATGGTGGTAGCAATGTCTTGAAAGTTTTGGGGTATTTTAGTATGGTTGGTTTGCTGAGGGTTCATTGTCTCTTGGGTGATTATCACACTGGTCTCAAGTGCTTGGAACCTATTGATATTAGTCAGTCAGGTGTTTACACCATTGTTATTGGATGCCACATTACCACCATTTACCACTACGGTTTTGCCAATCTTATGCTCCGCAGATACGTTGATGCAATTCGTGAATTCAACAAAATTCTACTGTACATCTTTAAGTACAAGGTGTACCATCAGAAGTCTCCACAATATGAACAGATATTGAAGAAGAATGAACAAATGTATGCGTTGCTGGCGATTTCCCTCTCGCTCTGCCCCCAAAGCAGGCTTGTTGATGAAACCGTGAACTCTCAGTTGCGAGAGAAGTATGGCGAAAAGATGAGTAGAATGCAACGATATGATGATGAGGCTTTTGCTATGTATGATGAGCTCTTCTCATATGCATGCCCCAAGTTTATTACCCCTTCAGCGCCCAGTTTTGAAGAGCCTCTAGTAAATTACAACCAGGATGCGTATAGACTTCAATTGAAACTGTTCCTTTATGAAGCAAAGCAACAACAGTTGTTATCAGGTCTCCGGACCTTCTTGAAAGTATATTCAACAATCTCCCTTGCAAAACTTGCAAGTTACATGGAAGTAGATGAACCAACTTTAAGGACTATCTTGATGACATACAAGCACAAGACTCATGCTGTTGATAGTGCTGGAAAAATAATATCCAATGCTGATGTAGATTTCTATATTGATGATGACACAATTCATGTTGTGGAGTCTAAACCTTCCAAACGGTATGGAGATTACTTCTTGCGTCAGGTTGTTAAGCTTGAAAAGGTGATCAACGAGATGGACAGTATAAAGCTGGAGTGA	1536	0.4212	MANDEERLQAQDLGYDPNFVPDPVKTFVVHLYRHIREKNVYEIHQMYETSFQTLSERFFKDTPWPSVDAVAQYVDNDHVFCLLYREMWFRHLYARLTPTLRQRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLKQFDQAWNVFGVLNFLQALVEKSTIIQILEQEKEGLEQFTSNDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLEPIDISQSGVYTIVIGCHITTIYHYGFANLMLRRYVDAIREFNKILLYIFKYKVYHQKSPQYEQILKKNEQMYALLAISLSLCPQSRLVDETVNSQLREKYGEKMSRMQRYDDEAFAMYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGLRTFLKVYSTISLAKLASYMEVDEPTLRTILMTYKHKTHAVDSAGKIISNADVDFYIDDDTIHVVESKPSKRYGDYFLRQVVKLEKVINEMDSIKLE*	512

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g4060	511	Pfam	RNA polymerase I-associated factor PAF67	102	497	IPR019382	GO:0003743\|GO:0005737\|GO:0005852
	Mtr3g4060	511	Hamap	Eukaryotic translation initiation factor 3 subunit L [EIF3L].	9	500	IPR019382	GO:0003743\|GO:0005737\|GO:0005852
	Mtr3g4060	511	ProSiteProfiles	PCI domain profile.	283	485	IPR000717	-
	Mtr3g4060	511	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3	14	510	IPR019382	GO:0003743\|GO:0005737\|GO:0005852
	Mtr3g4060	511	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT L	14	510	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g4060	K15029		-	gmx:100804691	967.607

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr3g4060	3	54355244	54359571	Mtr3g4060	3	54355244	54359571	ECH