LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g4048	ATGGCTCCTGCACCACCGCAATCTAATCGATCTCCTTCGCCGTCGCAACCGTCCGGGAAGAGTGAAGTATCTGATCTAAAATTACAGCTACGGCAGCTTGCTGGGAGTCGAGCTCCGGGTACTGATGACTCGAAGAGGGATCTTTACAAGAAGGTGATATCAAACATGACTATAGGTATTGATGTTTCGTCTCTCTTTGGTGAGATGGTAATGTGTTCAGCAACATCAGACATTGTTTTGAAGAAAATGTGTTACCTGTATGTTGGAAACTATGCCAAGGTTAATCCGGATCTTGCTCTTTTGACGATTAATTTTCTACAAAGGGATTGTAAGGATCAGGATCCAATGATTCGGGGACTGGCATTGAGGAGTTTGTGTTCACTTCGAGTGGCGAACTTGGTGGAGTATTTGGTTGGGCCTTTAGGGTCAGGGTTGAAGGATAATAATAGTTATGTCAGGACGGTGGCAGTAATTGGTGTTTTGAAACTGTATCATATATCAGCCTCCACGTGTATTGATGCAGATTTTCCAGAAACGTTGAAGCATTTGATGCTCAATGACCAGGATACTCAGGTAGTTGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCAACCACCTCAGAGGAAGCAGCTAGGGAGAGAGAAACTCTGCATAGCAAGCCAATTGTTTATTACCTTCTGAATCGCATTAAGGAATTTAGTGAATGGGCACAATGTCTTGTGATGGAATTGGTGGCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGACTCCAGCATGCAAATGGTGCTGTTGTCTTGGCAACTACAAAAGTATTTCTGCACTTGACTTTATCTATGGCTGATGTACATCAGCAGGTATATGAGCGTATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCAGGAAGTCCGGAACAATCATATGCAATTCTAAGCCACCTGCATCTCTTGGTCATGCGTGCACCATATATATTTTCCTTGGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTGTGTGAATATGCTGCAAATGTTGACATCCCAATTGCAAGGGAATCAATTCGGGCTGTTGGAAAGATAGCATTACAGCAGTATGATGTCAATGCTATTGTTGATCGGCTTCTGCAGTTTCTGGAGATGGAAAAGGACTATGTTACGTCTGAAGCTCTGGTGCTTGTGAAAGATCTTCTAAGAAAATATCCTCAATGGAGTCAAGATTGTATTGCTGTTGTAGGGAATATCAGTAGCAACAATGTCCAAGAACCTAAGGCTAAGGCAGCTCTCATATGGATGCTGGGGGAATATTCTCAAGATATGCATGATGCTCCGTATGTCTTGGAAAGTCTGGTTGAAAATTGGGACGAGGAGCATTCTGCCGAGGTTCGCTTGCATCTTCTTACTGCAGTAATGAAGTGTTTCTTCAAGAGACCCCCCGAGACTCAGAAAGCGCTGGGAGCTGCACTGGCCGCTGGTCTTGCTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTACAATACAATGTATCGGTGGCTGAGAGTGTGGTGAACCCTCCAAAACAAGCAGTTTCAGTATTTGCCGATACTCAGAGCAGTGAAGTTAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGCCTTCTTACATGTTCACCGATAAGGAACACCGAGGGACATTTGAGTTTGCAGATGAACTTGGAAATCTATCTATTAGTGCAGAATCCGGAGATTCTGTTGTTCCTGTGCAGAGAGTGGAGGCAAATGACAAGGATCTGCTTCTAAGTACCACGGAAAAAGATGATGTGAGAGATACTGGAAGCAATGGTTCTGCGTATAATGCTCCTTCCTATAATGGGTCTGCCCCTTCAGCAGCATCACAACCGCTTGCAGATTTGGCATTTTCAAGTACCAGCATGACTAGCCAAGCACCAGCATCTGGCTTGGCAATTGATGATCTGCTTGGTTTAGATTTTTCAGTTGGGACTGTAACCACACCATCACCTCCCCCATTGACCCTCAACCCAAAAGCTGTACTGGATCCTGGCACATTTCAGCAGAAATGGCGTCAACTACCAATATCCTTATCAGAGGAATATTCTTTAAGCCCTCTTGCTATTGCATCATTGACGGCTCCCAATGCACTCCTAAGGCACATGCAAGGTCATTCAATACAGTGCATTGCATCCGGTGGCCAGTCTCCTAATTTCAAGTTCTTTTTCTTTGCCCAAAAAGCGGAAGAAACGTCAATATATCTTGTAGAGTGTATAATCAACACATCATCGGCCAAGTCACAGATTAAAATAAAGGCTGATGACCAAAGCTCATCACGTGCATTCTCAACATTATTCCAATCAGCCTTGTCCAAATTTGGTTTGCCCTGA	2535	0.4284	MAPAPPQSNRSPSPSQPSGKSEVSDLKLQLRQLAGSRAPGTDDSKRDLYKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDQDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRTVAVIGVLKLYHISASTCIDADFPETLKHLMLNDQDTQVVANCLSALQEIWTLESTTSEEAARERETLHSKPIVYYLLNRIKEFSEWAQCLVMELVAKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATTKVFLHLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAILSHLHLLVMRAPYIFSLDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSNNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFADELGNLSISAESGDSVVPVQRVEANDKDLLLSTTEKDDVRDTGSNGSAYNAPSYNGSAPSAASQPLADLAFSSTSMTSQAPASGLAIDDLLGLDFSVGTVTTPSPPPLTLNPKAVLDPGTFQQKWRQLPISLSEEYSLSPLAIASLTAPNALLRHMQGHSIQCIASGGQSPNFKFFFFAQKAEETSIYLVECIINTSSAKSQIKIKADDQSSSRAFSTLFQSALSKFGLP*	845

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g4048	844	MobiDBLite	consensus disorder prediction	657	674	-	-
	Mtr3g4048	844	PANTHER	AP-4 COMPLEX SUBUNIT BETA-1	17	842	-	-
	Mtr3g4048	844	Gene3D	-	15	610	IPR011989	-
	Mtr3g4048	844	Gene3D	-	713	842	IPR012295	-
	Mtr3g4048	844	PANTHER	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	17	842	IPR026739	GO:0016192
	Mtr3g4048	844	Pfam	Beta2-adaptin appendage, C-terminal sub-domain	725	838	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Mtr3g4048	844	MobiDBLite	consensus disorder prediction	642	674	-	-
	Mtr3g4048	844	MobiDBLite	consensus disorder prediction	1	24	-	-
	Mtr3g4048	844	MobiDBLite	consensus disorder prediction	642	656	-	-
	Mtr3g4048	844	SUPERFAMILY	ARM repeat	29	599	IPR016024	-
	Mtr3g4048	844	Pfam	Adaptin N terminal region	40	552	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Mtr3g4048	844	SMART	B2_adapt_app_C_2	722	839	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Mtr3g4048	844	PIRSF	Beta_adaptin	11	844	IPR016342	GO:0015031\|GO:0030276

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g4048	Mtr-Chr3	54166323	54176497	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g4048	-		-	gmx:100801153	1501.88

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr3g4048	3	54166323	54176497	Mtr3g4048	3	54166323	54176497	ECH