Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4039 ATGTTGATTTCCTTATGTTTATGTTTATCTCTACCCAAGCTCTTCTCATATTTTCTCACTCTTTCGAATATCATTCATAATTCATCAATGGCAACGATTTTCATAAGAGAACTCGAAAACCGTTACATAACCTCATTAAAAAACTGCTTCAAAATAACACAACTAAAGAAGATTCATGCTCACGTCGTAAAGCTTTCACTTTCACAAAGCAACTTTTTAGTCACAAAAATGTTGGATTCATGCGACAACTTGGGTCACGTGAGTTACGCTACCCTGCTCTTCAAGCAACTCCTTCACCCAAATATCTTCACCTACAACGCTATCATCAGAACCTACGCTCACAATCGCCACCATTCTTCAGCAATCTCTGTCTTCGTTCAAATGCTCACACATTCAACAAATTCAGTTTTTCCAGACAAATTCACGTTCCCTTTTGTGATTAAATCATGCACGGGAATTCTGTGTCACCGGCTTGGTATGCAGGTTCATGGGCTAGTTTACAAATTTGGAGCTGATTTTCACTGTATAACCGAGAATGCGTTGATTGATATGTATACAAAATTTGGGGATTTAACCAATGCGTGCAAGGTATTTGAGGAAATGAGTCATAGAGATGTGATTTCTTGGAATAGTTTGATATTTGGGTATGTGAAATTGGGGCAGATGAATAGTGCAAGGGAACTGTTTGATGACATGCCTGTTAGGACAATTGTGTCTTGGACGACTATGATAACTGGGTATGGGAGAATGGGTTGTTATGGTGATGCATTGGATGTTTTTCGGGAAATGCAAATGGTGGGTATTGAACCGGATGAGATTAGTATTATAGCTGTTTTGCCAGCATGTGCACAGCTTGGAGCTCTTGAGGTTGGGAAATGGATTCATATGTATGCTGACAAAAATGGGTTTTTGCGGAAGACTGGTATATGCAATGCGTTGATTGAAATGTATGCCAAGTGTGGTTGCATTGATGAAGCTTGGAACTTGTTTGATCAGTTGGTTGAGAAGGATGTGATTTCTTGGAGTACCATGATTGGAGGGCTGGCTAATCATGGGAAAGGTTATGAGGCAATTCAACTCTTTGAAGAAATGTGTAAGGTGCGAGTAGCTCCTAATGAGATAACCTTTCTTGGTGTTTTGCTGGCTTGCTCTCATACTGGCTTGTGGGATGAGGGGTTGAAATATTTTGATGTTATGAGTGCGAGTTATCATATAGAACCAGAAATTGAGCATTACGGTTGCCTTATTGATCTTCTTGGACGTTCGGGATGCCTTGGTCAGGCTCTTGACACAATTTCAAAGATGCCAATAAAGCCGGATTCAAGGATATGGAACTCTTTGTTAAGCTCGTGTAGGATTCATCGCAATCTTCAGATTGCTGTCATTGCAGTGAAACAACTCATGGAGCTTGAGCCAGAGGAATCTGGAAACTATGTTTTGCTTGCAAACATGTATGCAGAACATGGCAAGTGGGAAGATGTATCAAATATTAGGAAACTCATAAGAAACAAGAGGATAAAGAAAACCCCGGGGAGTAGTTCGATTGAGGTCAACAATGTGGTTCAAGAATTTGTATCATCTGATGACTCAAAGCCATTTTCACAAGAGGTCTTTTGGATCCTAGAAGGGCTGGCTTTAAATCAAACTAGAACTAATGACTTGATGGAACCTGTAGAGGAAGATGCTGATAAAAGTTCACTGTAA 1704 0.3996 MLISLCLCLSLPKLFSYFLTLSNIIHNSSMATIFIRELENRYITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNVVQEFVSSDDSKPFSQEVFWILEGLALNQTRTNDLMEPVEEDADKSSL* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4039 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Mtr3g4039 567 Gene3D Tetratricopeptide repeat domain 43 164 IPR011990 GO:0005515
Mtr3g4039 567 Gene3D Tetratricopeptide repeat domain 289 387 IPR011990 GO:0005515
Mtr3g4039 567 Gene3D Tetratricopeptide repeat domain 165 288 IPR011990 GO:0005515
Mtr3g4039 567 Pfam PPR repeat family 236 283 IPR002885 -
Mtr3g4039 567 Pfam PPR repeat family 100 150 IPR002885 -
Mtr3g4039 567 Pfam PPR repeat family 336 383 IPR002885 -
Mtr3g4039 567 PANTHER OS05G0439300 PROTEIN 35 561 - -
Mtr3g4039 567 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 35 561 - -
Mtr3g4039 567 TIGRFAM PPR: pentatricopeptide repeat domain 238 272 IPR002885 -
Mtr3g4039 567 TIGRFAM PPR: pentatricopeptide repeat domain 103 130 IPR002885 -
Mtr3g4039 567 TIGRFAM PPR: pentatricopeptide repeat domain 339 373 IPR002885 -
Mtr3g4039 567 TIGRFAM PPR: pentatricopeptide repeat domain 207 233 IPR002885 -
Mtr3g4039 567 TIGRFAM PPR: pentatricopeptide repeat domain 179 206 IPR002885 -
Mtr3g4039 567 TIGRFAM PPR: pentatricopeptide repeat domain 309 338 IPR002885 -
Mtr3g4039 567 Pfam PPR repeat 207 233 IPR002885 -
Mtr3g4039 567 Pfam PPR repeat 179 204 IPR002885 -
Mtr3g4039 567 Pfam PPR repeat 411 435 IPR002885 -
Mtr3g4039 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 235 IPR002885 -
Mtr3g4039 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 336 IPR002885 -
Mtr3g4039 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
Mtr3g4039 567 Pfam E motif 454 516 IPR046848 -
Mtr3g4039 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Mtr3g4039 567 Gene3D Tetratricopeptide repeat domain 392 542 IPR011990 GO:0005515
Mtr3g4039 567 SUPERFAMILY TPR-like 185 494 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4039 Mtr-Chr3 54069767 54072939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4039 1 544 Glycoside Hydrolase AT3G49170 28.442 1.02e-79 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4039 - - cam:101511241 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4039 3 54069767 54072939 Mtr3g4039 3 54069767 54072939 ECH