Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4035 ATGGGTATAACAGAAGCATTTTCCAAATTTGTAGTTGAATTTTTACAAACATTCAAAAACTCACCACCAAACTCAATGCCTCATCATGATCACCTTGATCAAAATCATCAACAAAATATGCTCAAGCTCGACGAAAGGATGATTCGAGCTCTTGTTACTGTCTTCGGAATGGAAACAAATGGAAGAATCAAGAAGGAAAATGCTAGGCAAGTGGTGGAGAAGCTTGGTTTGATCTATGGTTCTGATCACAAGGAAAACAAGGCTTTTCAAGATGATGATGAAGAAGAAGTGGTTGTTGAAGAGGTGCTTGGTGAATTGGAAGATATGTCAAAGAGAAGTGAGTTATTGCTTGAAGCTTTCAAAATATTTGATGAGGATGGTGATGGATATATAGATGCAATGGAGTTGAAGAGAGTGCTTGATTGCTTGGGTTTGGATAAAGGTTGGGATATGAATACAATTGAAAGGATGGTTAAGGTTGTTGATTTGAACTTTGATGGAAAAGTTGATTTTGGTGAGTTTGAATTGATGATGGGATAA 540 0.3667 MGITEAFSKFVVEFLQTFKNSPPNSMPHHDHLDQNHQQNMLKLDERMIRALVTVFGMETNGRIKKENARQVVEKLGLIYGSDHKENKAFQDDDEEEVVVEEVLGELEDMSKRSELLLEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNTIERMVKVVDLNFDGKVDFGEFELMMG* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4035 179 PANTHER CALCIUM-BINDING PROTEIN CML42 84 178 - -
Mtr3g4035 179 SMART efh_1 115 143 IPR002048 GO:0005509
Mtr3g4035 179 SMART efh_1 153 179 IPR002048 GO:0005509
Mtr3g4035 179 Gene3D - 16 179 - -
Mtr3g4035 179 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Mtr3g4035 179 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
Mtr3g4035 179 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 84 178 - -
Mtr3g4035 179 SUPERFAMILY EF-hand 45 178 IPR011992 -
Mtr3g4035 179 ProSiteProfiles EF-hand calcium-binding domain profile. 149 179 IPR002048 GO:0005509
Mtr3g4035 179 CDD EFh 116 174 IPR002048 GO:0005509
Mtr3g4035 179 Pfam EF-hand domain pair 116 178 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4035 Mtr-Chr3 54033308 54034129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4035 116 178 EF-hand Containing Proteins AT4G20780 57.143 8.97e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4035 - - adu:107470962 246.514