Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4012 ATGACTCGCGTGTATATTGGAAATCTCGATTCAAGAATTTCTGAGAGGGATCTTGAAGATGATTTCCATGTTTTTGGAGTTATACGAAGTGTGTGGGTTGCAAGGAGGCCTCCTGGTTATGCTTTCATTGACTTTGATGACCGCAGAGATGCGCTTGATGCTATTCGTGAATTAGATGGTAAAAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAAAACTGGAGGTGGAGGGGGAGGCAGAGGTGGTGGTGGCGGTGGTGGTGGTCGTGGTCGGTCTGGTGGGGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCCCGCGAGTGTAATTCTTCTCGTGGTGGCTCTGGACGACGTCGGAGCCGCAGTCCACCTCGATTTCGCAGGAGCCCAAGTTACGGGCGAAGGAGTTACAGTCCTCGTGAGCGGTCCCCTAGGCGGCGCAGCCCTTCTCCTCGTCGACGCAGCCCTTCACCTCGCCGGCGCAGCTATAGCAGGTCACCACCTCCTTACCGTGGGCGTGAGGACGCAACACATGCTAACGGAAATGGGATAAGGGCTGCACATCGAAGCAGAAGTTGA 600 0.5317 MTRVYIGNLDSRISERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDGKNGWRVELSHNSKTGGGGGGRGGGGGGGGRGRSGGGGSDLKCYECGEPGHFARECNSSRGGSGRRRSRSPPRFRRSPSYGRRSYSPRERSPRRRSPSPRRRSPSPRRRSYSRSPPPYRGREDATHANGNGIRAAHRSRS* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4012 199 MobiDBLite consensus disorder prediction 153 167 - -
Mtr3g4012 199 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1 2 186 - -
Mtr3g4012 199 SMART rrm1_1 3 69 IPR000504 GO:0003723
Mtr3g4012 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Mtr3g4012 199 SMART c2hcfinal6 101 117 IPR001878 GO:0003676|GO:0008270
Mtr3g4012 199 SUPERFAMILY Retrovirus zinc finger-like domains 92 120 IPR036875 GO:0003676|GO:0008270
Mtr3g4012 199 Pfam Zinc knuckle 101 116 IPR001878 GO:0003676|GO:0008270
Mtr3g4012 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Mtr3g4012 199 MobiDBLite consensus disorder prediction 66 96 - -
Mtr3g4012 199 Gene3D - 101 166 - -
Mtr3g4012 199 MobiDBLite consensus disorder prediction 111 199 - -
Mtr3g4012 199 ProSiteProfiles Zinc finger CCHC-type profile. 101 115 IPR001878 GO:0003676|GO:0008270
Mtr3g4012 199 CDD RRM_SRSF3_like 3 71 - -
Mtr3g4012 199 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 186 - -
Mtr3g4012 199 SUPERFAMILY RNA-binding domain, RBD 2 97 IPR035979 GO:0003676
Mtr3g4012 199 Gene3D - 1 100 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4012 Mtr-Chr3 53864731 53867849 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4012 K12896 - pvy:116134871 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4012 3 53864731 53867849 Mtr3g4012 3 53864731 53867849 ECH