Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4000 ATGAATAATTTATATTTTCCCCTTTCTTCTTCCAGTGTAGGGTTCTTCTCAGTTCCCACTCATTCGCTCACCGGAGAGAAAGGATTCACCCACGGCGGCACAATGGAAGCTTCTTCGTCATCATCTTCGGCGATAGCACAACAAACATGGGAATTAGAGAACAACATAATCCCAATGGAAACTCCTTCAGACGATTCAATCTTCCACTACGACGAAGCAGGACAAGCCGAATTCCAACGCGATAAGCCATGGGCAAACGATCCTCACTACTTCAAGCGTGTCAAGATCTCTGCACTCGCTCTACTCAAGATGGTTGTTCACGCGCGTTCTGGTGGAACAATCGAGGTTATGGGTCTTATGCAAGGTAAAACCGATGCTGATTCAATCATCGTTATGGATGCTTTTGCGCTACCTGTTGAAGGAACTGAAACTCGTGTCAATGCTCAAGCTGATGCTTATGAATACATGGTTGATTATTCTCAGACAAACAAACAGGCTGGGAGGTTGGAGAATGTTGTGGGGTGGTATCATTCACATCCTGGTTATGGTTGCTGGCTTTCTGGGATTGATGTTTCGACACAGATGTTGAATCAGCAATTTCAGGAGCCGTTTTTGGCAGTTGTGATTGATCCAACAAGAACTGTTTCTGCTGGGAAAGTGGAGATTGGGGCTTTCAGGACTTACCCTGAAGGTTATAAGCCTGCTGATGATCCTATTTCTGAGTATCAAACTATTCCTCTTAATAAGATTGAAGATTTTGGTGTCCATTGTAAACAGTATTATTCCTTGGATATCACTTACTTTAAGTCTTCTCTTGATTCACACCTTTTGGATCTTCTGTGGAACAAATATTGGGTGAATACACTTTCATCTTCTCCTTTATTGGGCAATGGAGACTATGTAGCTGGACAAATCTCAGATTTAGCCGAAAAGCTAGAACAAGCAGAGAATCAATTGGCACACTCGCGTTTCGGGCCACTGGTAGCACCTACACCTAGAAAGAAAGAAGAAGAATCTCCACTTGCTAAGATCACTCGTGATAGTGCAAAAATAACTGTTGAACAAGTGCATGGTTTAATGTCACAGGTAATCAAGGACATCCTGTTCAACTCTGTTCATCAAGCTAACAAGTCTCGTACAGAAACATCTGACCCTGAACCAATGATTGAAAGTTGA 1176 0.4269 MNNLYFPLSSSSVGFFSVPTHSLTGEKGFTHGGTMEASSSSSSAIAQQTWELENNIIPMETPSDDSIFHYDEAGQAEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPADDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLVAPTPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANKSRTETSDPEPMIES* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4000 391 PANTHER BNAC07G13420D PROTEIN 58 383 IPR037740 GO:0004222|GO:0008180
Mtr3g4000 391 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 91 202 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mtr3g4000 391 Pfam Cop9 signalosome subunit 5 C-terminal domain 290 370 IPR040961 -
Mtr3g4000 391 ProSiteProfiles MPN domain profile. 94 231 IPR037518 -
Mtr3g4000 391 CDD MPN_RPN11_CSN5 83 355 - -
Mtr3g4000 391 Gene3D Cytidine Deaminase, domain 2 38 296 - -
Mtr3g4000 391 SMART pad1_6 93 230 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mtr3g4000 391 SUPERFAMILY JAB1/MPN domain 93 230 - -
Mtr3g4000 391 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 58 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4000 Mtr-Chr3 53739032 53741962 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4000 K09613 - gmx:100784909 679.478