Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3994 ATGGCCATTTCCCTCTACAACACTACACTTCCATTTCTTTCTCTTACAACAACAACTCTCAACTCATCAAAATCCACCCTAACATCAATCCTCACAATCACAAACCCAACAACACGATTTCAGTTCCCAAACATCGCAATGAACTTGTGCACCACCAAATCCGAACCCTCAGCATCTTCTTCGTCAATGCAACACGTGCCAGAGCTAGATTCTAACGAAATGGAACGTGTGGCAAACCAAACATTCCAAAGGTACACTTCCAACAATACCAAGAGGAGTGGTAAAGGTACAGCAATCGTGTGGTTTAGAAACGATCTCAGAGTTTTGGATAATGAAACTCTCTACAAGGCTTGGCTTTCCTCACAAACTTTATTGCCTGTTTACTGTATTGATCCTCGGCTATTTGCAACCACTTACCATTTCGGATTTCCAAAAACTGGAGCATTGAGAACACAATTTCTCCTTGAATGTTTGGATGACTTGAGGAAGAATCTAATGAAACGGGGACTTAATTTGCTTATTCAACATGGCAAACCTGAAGATATTCTTCCTTCTCTAGTTAAAGCTTATGGAGCTCATACAGTTTATGCACAGAAAGAAACTTGTAGCGAAGAGTTGAATGTTGAAAGGTCTGTAAACAATCGTCTTCAACAAGTGGTGGTACCATCTAATGGATCTGCTGGGGCGGCAACAACTTCTAACAGCCACCCCAAATTACAGTTTGTTTGGGGCACCACTATGTACCACCATGATGATCTTCCTTTTGATGTCCCTTGTTTGCCGGATGTTTATACTCAATTTCGTAAGACTGCTGAAGCGAAATGTGTCGTGCGCTCATGCATCAAACTGCCAACATCACTTGGACCACCTCCCCCAATTGAGGATTGGGGATGTCTTCCTTCATTGGAGCAGCTGGGACTTTCCTCACAGAATGTTAACAAGGGGATGAAATTTGTGGGGGGTGAAACTGCCGCATTGAGCAGAATATATGAATACTTTTGGAAGAAGGATTTACTAAAGGTATATAAAGAGACCCGAAATGGGATGTTAGGGCCTGATTATTCTACTAAATTCTCGCCATGGCTTGCATCCGGAAGCTTGTCTCCTCGTCTCATACACGAAGAGGTGAAGAGATATGAGAATGAAAGACAAGCAAATAGTTCTACCTACTGGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTATCAGTCAAATATGGAAATTCACTTTTCCATATAGGTGGACCTAGAAATGTTCAGAAAAATTGGAGCCAAGACAAGAAATTATTTGAATCCTGGAGAGATGGTTGTACAGGGTATCCTCTGATTGATGCAAACATGAAAGAATTATCCACTACAGGATTTATGTCGAACCGTGGACGGCAGATTGTGTGTTCCTTCCTAGTTCGTGATATGGGCATAGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGAGTCGGGAATGATCCCAGAGAAGACCGATATTTCAGCATACCAAAACAAGCACAAACATATGACCCAGAAGGTGAATATGTTGCATACTGGTTGCCACAGTTAAGAGCAATCTCAAAAGAAAAAAGGAACTTTCCTGGTAATTTATACATTCGTCAAATTGTGCCTCTCAAGTTTGGAACGACTAGTAGACATAATAATGGAGACAAGTCACTTGGTGCAAGAAGAGGTAATGATAGAGGAAATGAACGAAGATGGAACAGGAGATAA 1788 0.4128 MAISLYNTTLPFLSLTTTTLNSSKSTLTSILTITNPTTRFQFPNIAMNLCTTKSEPSASSSSMQHVPELDSNEMERVANQTFQRYTSNNTKRSGKGTAIVWFRNDLRVLDNETLYKAWLSSQTLLPVYCIDPRLFATTYHFGFPKTGALRTQFLLECLDDLRKNLMKRGLNLLIQHGKPEDILPSLVKAYGAHTVYAQKETCSEELNVERSVNNRLQQVVVPSNGSAGAATTSNSHPKLQFVWGTTMYHHDDLPFDVPCLPDVYTQFRKTAEAKCVVRSCIKLPTSLGPPPPIEDWGCLPSLEQLGLSSQNVNKGMKFVGGETAALSRIYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRLIHEEVKRYENERQANSSTYWVLFELIWRDYFRFLSVKYGNSLFHIGGPRNVQKNWSQDKKLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRAISKEKRNFPGNLYIRQIVPLKFGTTSRHNNGDKSLGARRGNDRGNERRWNRR* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3994 595 Pfam DNA photolyase 98 276 IPR006050 -
Mtr3g3994 595 Pfam FAD binding domain of DNA photolyase 394 548 IPR005101 -
Mtr3g3994 595 Gene3D HUPs 60 244 IPR014729 -
Mtr3g3994 595 TIGRFAM crypto_DASH: cryptochrome, DASH family 97 540 IPR014133 GO:0003913|GO:0006281
Mtr3g3994 595 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 415 569 - -
Mtr3g3994 595 PANTHER CRYPTOCHROME 82 572 IPR002081 -
Mtr3g3994 595 PRINTS DNA photolyase signature 441 457 IPR002081 -
Mtr3g3994 595 PRINTS DNA photolyase signature 461 479 IPR002081 -
Mtr3g3994 595 PRINTS DNA photolyase signature 500 514 IPR002081 -
Mtr3g3994 595 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 95 295 IPR036155 -
Mtr3g3994 595 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 316 552 IPR036134 -
Mtr3g3994 595 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 96 229 IPR006050 -
Mtr3g3994 595 MobiDBLite consensus disorder prediction 575 595 - -
Mtr3g3994 595 Gene3D - 245 414 - -
Mtr3g3994 595 MobiDBLite consensus disorder prediction 568 595 - -
Mtr3g3994 595 PANTHER CRYPTOCHROME DASH 82 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3994 Mtr-Chr3 53684423 53690283 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3994 K25656 - gmx:100783312 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3994 3 53684423 53690283 Mtr3g3994 3 53684423 53690283 ECH