Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3987 ATGGATAATCAACCGAATCAAAATCAAGCTCAACCACCACGTGACGAAGAAGAAGACGAAGATTCATCGAGGATGGAAGATGAAGAGTTAATTTCAAAGGTTAACAAACTCATGGATAAAATCACTTCCTCTCCCGATAACCCTAAACCTAATGTTCTTCACGCTCTTGCCACCATTCTTGAAACTCAAGAGTCCAACTACATGGATGAGAATGCTCATTCATCTTCAACCAATGCTCGTGCTGCCCATAACATTGGACGCCTTGGGAGTATAATTCGGGAAAACGATGATTTCTTTGAGTTAATATCTTTGAAGTTTCTCTCCGAAAATGGATACTCCACCGCAGTTCGAGCTGCTTCTGTCAGACTACTCTTGTGCTGTTCTCTAACTTGGATTTATCCCCATGTTTTTGAAGAACCGGTCCTTGAGAACTTAAACAATTGGGCGACGGAGGATAGTAGTAGGTCGGCGGCGGAGGAGCAAAACCTGAAGCGTGATCCGGTGGGAAAAGATGCCTCGGATTCAGAAATGTTGAAAGCATATTCTACTGGACTCCTTGCCGTGTGTTTGGTTGGTGGAGGTCAAATAGTGGAAGATGTATTGACATCTGGCTTGTCAGCTAAGCTCATGCGATATCTTCGTTTGTGCGTGCTGGGTGAGACTAGTGGCAGCCAGAAAGATAGTAGTCATTTATCGGAGAACAAACATTCATCTGGGAATACTTCAGTGAGAGGTAGAGATGATAGTCGTGGAAGGTTTCGCCAGCTCCTGGAATCAAGTCATGTAGATGATACAAGGATGATTGAAGAGGGATCTTTTGATGACCAAGCTCCTGAACGGGGTCAGGATAGCGGACAAGCTTGCCAAGAAGATCCTTGGATAGATGGTGAACCACCTGATGGACTCAGCGAGGGTGCTGATGTCTGCGAGGCTGATTCCGAGGGGGAAGAGAGATGGCGCTGTAAAGATATTCGTGATGGAAGGATAAAATATGGTGACCATGAAGACAATGCTAGAGACGAATCTTCTAGGCGGCGTACTAACCGTGGATGGGGAAGATCTAGGGGGAAAGGAAGGGTCAATGAAGGGCCAGTAGACAGTGAACCTGTTCTGTCATCTGCTGGTTCCGCCAGTCGCCTAGGACAGGGGCGGAGTGTTAGAGATAGGAGCTCGTTGAGGAATGGTGACGTTAAGCGGGTGCCTGATTCTAAGAAGACTCTTACGAGTTCTATTTCCGAGGCTTTGATTTCTGAAAGAGAGGATAATGATGATTGTTTCCAAGAGTGTCGTATTGGAAGTAAAGATATCTCCGATCTTGTTCGGAAAGCAGTCCAAGCTGCTGAAGCTGAAGCCAGGTCAGCCAATGCACCTGAAGAAGCCGTCAAAGCAGCTGGTGATGCTGCTGCTGACCTTGTTAAAACTGCAGCTTCAGAGGAATATAAATCCACCAATGATGAAGAAGCATCTGTTTTGGCTGCTTCGAGAGCTGCATCAACTGTTATTGATGCTGCATCTGCTGTTGAAGTTTCAAGGAGATCTGTCTGCATCAATACCGAGACAGAGAATGTTACTAGCAGAGAAACAGAATCCATTGAGGATGTTGAAGATTATTTCCTCCCAGACACTCGAACACTTACACAATTGAGGGAAAAATATTGCATTCAGTGTCTTGCATTACTTGGAGAATACGTTGAAGTTCTTGGACCTGTATTGCACGAGAAGGGTGTTGATGTTTGTCTTGGACTTCTGCAGCAAAATTCTAAACATCACGAGCCGTCCAAGGTTGCTTTCGTGTTGCCCGATGTCATGAAGCTGATATGCGCTTTGGCTGCCCATAGGAAATTTGCTGCACTATTTGTGGACCGTGGGGGAATGCAAAAGCTTCTTGCTGTCCCTAGAACGGCCCAAACATTCTTTGGCCTTTCTTCGTGTTTATTTACCATCGGTTCCCTTCAGGGGATAATGGAACGGGTTTGTGCTCTTCCATCTGATGTGATTTATCATGTGGTTGAGTTGGCTCTCCAACTCATCGAGTGCAATCAAGACCTAGCCCGGAAGAATGCAGCATTGTTTTTTGCTGCCGCATTTGTCTTTAGAGCAGTTCTCGATGCTTTTGACTCTCAGGATGGTTTACAGAAATTACTGGGCCTTCTCAATGATGCTGCTTCCATAAGATCAGGAGTAACTTCTGGAGCCTTGGGCTCGTCTAACTCAGGATCACTTCGAAATGATAGAACATCATCTGCTGAAGTGCTGACCTCATCTGAGAAGCAGGTAGCCTATCACACTTGTGTTGCTCTGCGGCAATATTTCAGAGCACACCTCCTAGTATTAATAGATTCTATCCGTCCAAACAAAAGCAATCGTAGTTCTGCTAGAAATATTCCAAGCACAAGGGCTGCTTACAAGCCACTAGATATTAGTAACGAGGCAATGGATGCAGTATTCTTACAATTACAAAAAGATCGGAAGCTAGGTCCGGCATTTGTCAGAACAGGTTGGCGAGAAGTGGAGAAATTCTTGGCATCTAATGGGCATATTACTATGCTGGAATTATGTCAGGCCCCACCCGTGGAGCGATATCTACATGATTTGCTTCAGTATGCATTAGGGGTTTTGCAAATTGTTACATTGGTACCTAGCAGTCGTAAAATGATTGTAAATGCAACATTAAGCACCAATCGTGCTGGTATATCTGTAATTTTGGATGCAGCAAATATTGCCAGTAGTCACGTTGACCCCGAGATAATTCAACCAGCATTAAATGTTTTAGTCAACCTTGTTTGCCCTCCTCCTTCAATCAGCAATAAACCACCTGCAGTGTCACAAGGCCAGCAGTTCCCGTCTTCACAAGCCTCTAATGGTGCTCTAGAGACTAGAGACAGAAATGCCGAACGTAATATCACAGATCCTAGGGAGAGGAATGGAGAGTCCAGTGCTGTAGATCGAGGAACTGCTGCAGCACTGACTACACAATCTGTGAATACTACTCCTCAAACTCCCGTTCCCTCTGCAAGTTCAGGCTTGGTTGGTGACCGAAGAATATCTTTGGGTGCAGGAGCACGCTGTGCCGGCCTTGCTACACAGTTGGAACAAGGATATCATCAGGCAAGAGAGGCTGTCCGTAATAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCGCGTATATATTCACCTCCAGCTGCCCTGGACTGTCTCCGTGCTCTAGCTTGTCGGGTACTGCTTGGATTAGCCAGAGATGATACTATTGCACATATATTGACAAAACTTCAGGTTGGGAAAAGACTGTCAGAACTAATCCGGGATTCAGGCAGCACAACACTTGGAACAGAACAGGGTAGGTGGCAAGCTGAACTATCCCAGGCTGCAATTGAGCTAATTGGGATTGTCGCTAATTTAGGGCGTGCAAGTACATTAGTTGCTAGTGATGCAGCTACTCCTGCATTAAGGCGCATTGAAAGGGCTGCCATAGCTGCTGCCACTCCTATTACTTACCCTTCAAGGGAACTCTTGCTCTTAATTCATGAACACTTGCAGGCATCTGGATTGGGACAAACTGCTTCTTTATTGCTTAAAGAGGCTCAGTTAACTTCTTTGCCGTCATTACTTGCTCCATCTTCCCTTGCACAACAACCCACAACACAGGAAGTTTCTTCAACACAAATTCAGTGGCCTTCGGGTCGTACTCCTAGTGGATTTCTCACCAGTAAACTGAAGTATAATTCAAAGAATGAGGATGCTTGCTTGAAAAGTGATGCTGGCTCTGCAAGGAAAAAGTCGCTAACTTTCTCGTCGTCTTTTGGTTCTCATACAAGACACCAAGTTATCGACTCTCGGCATTCATCAACCAGAAAATGGTTACGTGCTGGGAAAGAGTCTTCAGAAACTAGTACAGTAGAGAATCCATCTGAATCTTCAGTAAAACATAACACTGAAACTGGATCTCAGTTCAAGACTCCAATCACCTTGCCGACCAAACGAAAGTTATCGGATCTAAAGGACATACCAATGTTTTCATCATCTGCAAAGCGACTAAATGTCGGGGATCAGGGACTTCGTTCTCCTATTTGCTCGAGTTCAGTTCGTAAAAGCAGCCTGCATACTGATGCTGTTGGGCTTTTCACACCAACTGGTAATCTGAGGAGTCAGCAAGGCCGTTGTACAGCTGACTATGTGGATGACAATCAGTACTGCATCTCAAATCTAGGTCAGATGACACCATCCTCCCAAGTAGTGAATGACCTTCAGCTGAACAACCCTGAGCGTGTGACACTGGATTCTCTAGTGGTTCAGTATCTGAAACATCAGCATCGCCAATGCCCAGCCCCCATTACCACCCTTCCTCCAATATCTCTTCTGCACCCACATGTTTGTCCGGAACCTAAGCGAAGCCTCGATGCCCCCTCTAATGTGACTGCTCGGCTTGGTACCCGTGAATTTAAGTTTATGTATGGTGGAGTACATGGTAATCGCAAGGATCGTCAATTTGTTTTTAGCCGGTTTAGGCCATGGCGCACTTATCGGGACGATGCGGGTGCATTATTAACATGCATTACTTTTGTTGGAGACTCCTCGCATATTGCTGTTGGTAGCCATACTGGAGAACTCAAATTTTTTGATTCAAACAACAATAATGTGGTAGAGAGCTTCACTGGCCACGATGCTCCCTTGACCCTTGTTCAATCTTTTGTTTCTGGTGAGACCCAATTGTTGCTTTCTTCGTCCTCTAAAGATGTTAAGATGTGGGATGCAACATCAATATTAGCTGGTCCCACCCGATCATTTGAAGGGTGCAAGGCTGCCAGGTTTAGTAATTCCGGGAAAACATTTGCTGCCTTGTCTTCAGAATCTACTGCACGGGAAATCCTTTTATATGATATCCAGGAAGGCAAGTTAGAAGCAACCTTGTCAGATACATTCACTACTTCTACAGGGCGGGGTCATGCTTATTCTTCAATCCACTTTAGCCCTGCCGATTCAATGCTGCTTTGGAATGGTGTCTTATGGGACCCGCGAGTGTCTACGCCTGTTCATCGCTTTGATCAGTTCACTGATTATGGAGGTGGAGGCTTTCATCCTGCTGGAAATGAGGTTATTATAAACTCCGAAGTCTGGGATCTGCGCAAGTTCAGACTTCTACGTAGTGTAGCATCATTAGATCAGACGGCAATAACATTCAATGCTCGTGGAGATGTTATGTATGCAATCTTAAGGAGAAATCTTGAGGATGTAATGTCAGCAATGCATGCACGCCGTGTTAAGCATCCGCTTTTTTCAGCGTTTCGCACAGTGGATGCAATAAATTATTCTGACATTGCTACCATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACCGAACCAACAGATTCATTTGTTGGGTTGATTACCATGGATGATCAAGGTGATATGTATTCGTCAGCCAGATCATATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCTGATCCTGATGATGCTGAAAGCGAGGAAGAAGATGAAGATGACGACGATGACAATGAAGATCCTCTTTTAGGCCCTGGTTTTGGTGTGGGAAGCGACAGTGATGCTGAAGACATGAGCAGCAATGAAGATGATGATGATAGTGTAAGTGATCCTGATGATGATGACGACGATGGAGGTTACATGATGGACGATATAGACTTTGATGGACACGACATGTTGGATATTGTGACGGATGGGGATGAGGACGACGATGATGATAGTCAAGGACTTGAATCCGAGAGTAGTGATGACGATTATGACTTTGGTGGTTATTAG 5790 0.4513 MDNQPNQNQAQPPRDEEEDEDSSRMEDEELISKVNKLMDKITSSPDNPKPNVLHALATILETQESNYMDENAHSSSTNARAAHNIGRLGSIIRENDDFFELISLKFLSENGYSTAVRAASVRLLLCCSLTWIYPHVFEEPVLENLNNWATEDSSRSAAEEQNLKRDPVGKDASDSEMLKAYSTGLLAVCLVGGGQIVEDVLTSGLSAKLMRYLRLCVLGETSGSQKDSSHLSENKHSSGNTSVRGRDDSRGRFRQLLESSHVDDTRMIEEGSFDDQAPERGQDSGQACQEDPWIDGEPPDGLSEGADVCEADSEGEERWRCKDIRDGRIKYGDHEDNARDESSRRRTNRGWGRSRGKGRVNEGPVDSEPVLSSAGSASRLGQGRSVRDRSSLRNGDVKRVPDSKKTLTSSISEALISEREDNDDCFQECRIGSKDISDLVRKAVQAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEYKSTNDEEASVLAASRAASTVIDAASAVEVSRRSVCINTETENVTSRETESIEDVEDYFLPDTRTLTQLREKYCIQCLALLGEYVEVLGPVLHEKGVDVCLGLLQQNSKHHEPSKVAFVLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRTAQTFFGLSSCLFTIGSLQGIMERVCALPSDVIYHVVELALQLIECNQDLARKNAALFFAAAFVFRAVLDAFDSQDGLQKLLGLLNDAASIRSGVTSGALGSSNSGSLRNDRTSSAEVLTSSEKQVAYHTCVALRQYFRAHLLVLIDSIRPNKSNRSSARNIPSTRAAYKPLDISNEAMDAVFLQLQKDRKLGPAFVRTGWREVEKFLASNGHITMLELCQAPPVERYLHDLLQYALGVLQIVTLVPSSRKMIVNATLSTNRAGISVILDAANIASSHVDPEIIQPALNVLVNLVCPPPSISNKPPAVSQGQQFPSSQASNGALETRDRNAERNITDPRERNGESSAVDRGTAAALTTQSVNTTPQTPVPSASSGLVGDRRISLGAGARCAGLATQLEQGYHQAREAVRNNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKRLSELIRDSGSTTLGTEQGRWQAELSQAAIELIGIVANLGRASTLVASDAATPALRRIERAAIAAATPITYPSRELLLLIHEHLQASGLGQTASLLLKEAQLTSLPSLLAPSSLAQQPTTQEVSSTQIQWPSGRTPSGFLTSKLKYNSKNEDACLKSDAGSARKKSLTFSSSFGSHTRHQVIDSRHSSTRKWLRAGKESSETSTVENPSESSVKHNTETGSQFKTPITLPTKRKLSDLKDIPMFSSSAKRLNVGDQGLRSPICSSSVRKSSLHTDAVGLFTPTGNLRSQQGRCTADYVDDNQYCISNLGQMTPSSQVVNDLQLNNPERVTLDSLVVQYLKHQHRQCPAPITTLPPISLLHPHVCPEPKRSLDAPSNVTARLGTREFKFMYGGVHGNRKDRQFVFSRFRPWRTYRDDAGALLTCITFVGDSSHIAVGSHTGELKFFDSNNNNVVESFTGHDAPLTLVQSFVSGETQLLLSSSSKDVKMWDATSILAGPTRSFEGCKAARFSNSGKTFAALSSESTAREILLYDIQEGKLEATLSDTFTTSTGRGHAYSSIHFSPADSMLLWNGVLWDPRVSTPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVASLDQTAITFNARGDVMYAILRRNLEDVMSAMHARRVKHPLFSAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQGDMYSSARSYEIGRRRPTDDDSDPDDAESEEEDEDDDDDNEDPLLGPGFGVGSDSDAEDMSSNEDDDDSVSDPDDDDDDGGYMMDDIDFDGHDMLDIVTDGDEDDDDDSQGLESESSDDDYDFGGY* 1930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 1276 1293 - -
Mtr3g3987 1929 PANTHER VPRBP PROTEIN-RELATED 22 264 IPR033270 GO:0016567
Mtr3g3987 1929 PANTHER VPRBP PROTEIN-RELATED 320 1262 IPR033270 GO:0016567
Mtr3g3987 1929 PANTHER VPRBP PROTEIN-RELATED 1257 1812 IPR033270 GO:0016567
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 1276 1323 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 990 1009 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 223 252 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 1 33 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 371 388 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 936 985 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 1826 1846 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 223 239 - -
Mtr3g3987 1929 Gene3D - 1503 1827 IPR015943 GO:0005515
Mtr3g3987 1929 SMART WD40_4 1545 1585 IPR001680 GO:0005515
Mtr3g3987 1929 SMART WD40_4 1502 1542 IPR001680 GO:0005515
Mtr3g3987 1929 SMART WD40_4 1590 1628 IPR001680 GO:0005515
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 389 403 - -
Mtr3g3987 1929 SUPERFAMILY WD40 repeat-like 1503 1721 IPR036322 GO:0005515
Mtr3g3987 1929 SMART Lish 1168 1200 IPR006594 GO:0005515
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 1811 1929 - -
Mtr3g3987 1929 PANTHER BNAA03G51310D PROTEIN 1257 1812 - -
Mtr3g3987 1929 PANTHER BNAA03G51310D PROTEIN 22 264 - -
Mtr3g3987 1929 PANTHER BNAA03G51310D PROTEIN 320 1262 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 1861 1887 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 990 1006 - -
Mtr3g3987 1929 ProSiteProfiles LIS1 homology (LisH) motif profile. 1168 1200 IPR006594 GO:0005515
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 1294 1323 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 273 317 - -
Mtr3g3987 1929 SUPERFAMILY ARM repeat 553 1081 IPR016024 -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 330 407 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 938 958 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 330 348 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 1900 1929 - -
Mtr3g3987 1929 MobiDBLite consensus disorder prediction 959 979 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3987 K11789 - gmx:100796030 2823.5