Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3964 ATGGTTGGAATGTCGAATAATTTGGTTTCGGAGTCAGTAACCAGCAGTCAGATGGCTCAATTGGAGCCTATTATGAACAAGGCAGATGGCTCAATGGGACTCTTGCGTCCTGTGTCTACTGATTCCATGTCACAAAATCAGGGAGCCTCGAATGGTGAACCCGTGTCTCAAGGCTTACCACTTTCTAATCGGTTGAGTGGTCAAGTAGGTGGCGGTGATATGGGAATGCACCGGGTTATTATGCAGAACAAACAATCCATGCAAATGGGGGCAGCGCCGAACAATTTGGGCGCACATCAAGTGTCAGCAGCTCCTAAGCGAAAGGCAACAATGGAACTTCCTTCGGGTAGCTTTATAACACCTAGCAAGCGGGAGAAACCAATGGCACAAAGACCTTGGATGCCACAAGGATCTAATTCATCAACCAAAATTGCTCCACGGATGCAATCCTCATCAAATCTTTCTAGGGTGAATCATTCGGCGGCAAGTGGTAAAAGAAAAACACAAGCGGATAACACCTCAGGAAAACCCGCGACTCCTCGGTCCTCAAATTCTAAAAATCAGAATGCACAGTTGAAAGAATCCTCCAAGGTTCAGACTGAATCATCTGAGAGTGTTAGGTCAAAGATGAGGGAGTCATTAGCTGCTGCTCTGGCGTTGGTATCCCAGCAAGATAAACCTCTGGTGTCAAACGACGACAAACCTAACAATGCTGCCAATAGCTCTCAGTGTGCTGGTTCAGCATCTGCATCCGCTGACACTGCTCCGGAGCAAAAGCAGGAAATTTGTCAGCCTGTTAACTCCTCTTTAGCTGGGGCTGATTCCGTTGACCATGTGATGGGAGAAGAGCACTTGGATAGTACATCTACTGAAGGTTTTTCTGAAAAACCTAAGGATTATCAAGCGGGATTCACAAACGTGTCAAACAATGAAGACATGCTGAGTTCCGATAAGCAAGATTTTCAGTCTAACTACACTTTAACTACTGATGATGTTCCTTTCAGTGATAGTTTCTTTGTGAAAGATGAACTTTTGCAGGGAAATGGTCTTTCCTGGGTATTATCTGATATGGATCATATGGTGGTCATTGATGATCAAAGTGAAAGCCAAACTACGATAGAGAAGAAATTGGAACCTGAGGAAACAGGTGGAGTTTGTAGGGAGGTGGTCCCTTTACCTGAGCTTCTAGCATCAAGGATAGAAGCAGAGCTCTTCAAACTGTTTGGAGGTGTGAATAAGAAATACAAAGAGAAGGGAAGGTCTCTTTTGTTCAACCTGAAAGATCGCAATAATCCTGAACTCAGAGAAAGGGTTATGTTTGGTAAAATTCTTCCAGAACAACTATGTTCCATGACTGCAGAGGAACTTGCTTCAAAGGAGCTTTCTGAGTGGAGGATAGCCAAGGCTGAGGAGTTCGATAAAATCAAGGTTTTACCTGATTCAGATGTTGATATTAGACGTTTAGTCAGGAAAACGCATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATGTTCCAGTGGAAGAGGTGTCTGGTGGCAAAAATTCTGTTGTTCGAAGGCAACCGGTTAAGAAGGACGTGGAAGGCACTTCTCCTTCCAAACCTGATGTAGTCAAAAGCGATGTAAACACTGATAATGAAAAGAGCAGCTTACAGACAGATAATCAATTTTCCATTACCATTTCTTCCAATGATGGGACTGATCCAATGGAAGGGCTTATGACAGATGATGATGCATTGAAGGACCCTAACTTTCTTCCACCAATTGTATCACTTGATGAATTCATGGAATCTCTTAATTCTGAGCCACCGTTTGAAAATTTACCTGTAGAGTCTGGAAAAGCACCTATATCGGAAGAGGATGTTTATGGGGTTGGATCTAAATCAAAATCTTCTGATTTAACTCCAAGTGAGCAAGATGATGTCAGTGCTAGTAAGTCTGATAAGCTTCAAAGCACAGATGCCGAGGAAGAAAAAAAAGTTAATGCTGATGCAGGGTCCATCTCGTCTGATGCAAAACACGGTGAAAGCCGATCTGACACAAAGCCGACTGATGGTCATTCCAAGGAAATGTCACCTGATGGCAAAAAGTCAACTTCCAATGATGCTGAGTTGAGAGCTAGTCAGTTTCATGCAGAAGAGAGACATGGCAAGGATAAAGTGTCTAAAACTACAGTTCCCATTAAGGGTGAATGCCTCTGGGAGGGAATGCTCCAGCCAAACATCTCAACCACTGATTCAGTCATTAGCATCTTCAAAAGCGGTGAGAAAACTTCTACCAAAGACTGGCCTGGATTTCTCGAGATCAAGGGAAGGGTTCGACTGGATGCATTTGAAAAATTTCTGCGAGAGCTTCCACAGTCAAGAAGTCGTGCCATCATGGTTTCACATTTTATTTCCAAAGGCATAACCCCTGAGGAGCAAGCAACACTCCGTGAGGTGGCTGACTCGTATATTTTGGACGAGAGAGTGGGATTTGCAGAACCTGTGCATGGAGTTGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTCAGCAAGATACTTCCAAAGGAACAAATTGAAGCAGTTAATTCTATTGATAATGGTCTAATTGGTATTATTGTATGGAGAAAAACTAATATAACTACATCTATATCTCCCACCGCGCAATCACATCACAAACATAGCTCTAAAAGGCAAATTTTGAGTAGAAGACAACAAGATACTAATGTGAATGCCAATTCTACCCATAATGCAGTGCCCTCTATGGGGTTTAAGACCACCGTGAGTGAACCTCCGAGTGGTGATGATGATGATGTTCCTCCTGGATTCGGGCCACCAGCCCGGGTTGAGGATGACCTCCCGGAGTATAATTTTTCCGGTAGTTCAAATCCATCATCACACTTGGTTCAAAAACATATGGGACCAAGTATGGTCACATCTCACTCGGTTGTCCAAACCCCATCACGTCCTGCACAACAAATGAGAGAACTTGTACACAAATATGGGCAAAACAAAACAACTGTAACCTCGGTAAACTGGCAGGACAAATTTGGGGGGTCAATTCAACCCTGGAATGATGACGATGATGATATACCAGAATGGCAACCTCAAATCAACAACCAGAATCAGTTTCCTCCTCAACAAACAATGAATAATTTTCATCTTAGACCTCATGTTGTGAATCAATCATATGCGGGTTTACCCCAGCAATCAATTATGCCGACACAATATCTGCAACCCCCTATGAATGTGACACATGTACAGCAAAATTTTGGCCCTCAGTGGGTTCCTTCTATTCAGGGTAACAACACACAACCAAGTGCTGCACCACCCTATGGAACACCTACACAAGGAACTACTCCGTGGTCTCAACATGTTTCTAGAAGTAGAAGACTTTAG 3399 0.4319 MVGMSNNLVSESVTSSQMAQLEPIMNKADGSMGLLRPVSTDSMSQNQGASNGEPVSQGLPLSNRLSGQVGGGDMGMHRVIMQNKQSMQMGAAPNNLGAHQVSAAPKRKATMELPSGSFITPSKREKPMAQRPWMPQGSNSSTKIAPRMQSSSNLSRVNHSAASGKRKTQADNTSGKPATPRSSNSKNQNAQLKESSKVQTESSESVRSKMRESLAAALALVSQQDKPLVSNDDKPNNAANSSQCAGSASASADTAPEQKQEICQPVNSSLAGADSVDHVMGEEHLDSTSTEGFSEKPKDYQAGFTNVSNNEDMLSSDKQDFQSNYTLTTDDVPFSDSFFVKDELLQGNGLSWVLSDMDHMVVIDDQSESQTTIEKKLEPEETGGVCREVVPLPELLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKILPEQLCSMTAEELASKELSEWRIAKAEEFDKIKVLPDSDVDIRRLVRKTHKGEFQVEVEHEDNVPVEEVSGGKNSVVRRQPVKKDVEGTSPSKPDVVKSDVNTDNEKSSLQTDNQFSITISSNDGTDPMEGLMTDDDALKDPNFLPPIVSLDEFMESLNSEPPFENLPVESGKAPISEEDVYGVGSKSKSSDLTPSEQDDVSASKSDKLQSTDAEEEKKVNADAGSISSDAKHGESRSDTKPTDGHSKEMSPDGKKSTSNDAELRASQFHAEERHGKDKVSKTTVPIKGECLWEGMLQPNISTTDSVISIFKSGEKTSTKDWPGFLEIKGRVRLDAFEKFLRELPQSRSRAIMVSHFISKGITPEEQATLREVADSYILDERVGFAEPVHGVELYFCPPHKKTVEMLSKILPKEQIEAVNSIDNGLIGIIVWRKTNITTSISPTAQSHHKHSSKRQILSRRQQDTNVNANSTHNAVPSMGFKTTVSEPPSGDDDDVPPGFGPPARVEDDLPEYNFSGSSNPSSHLVQKHMGPSMVTSHSVVQTPSRPAQQMRELVHKYGQNKTTVTSVNWQDKFGGSIQPWNDDDDDIPEWQPQINNQNQFPPQQTMNNFHLRPHVVNQSYAGLPQQSIMPTQYLQPPMNVTHVQQNFGPQWVPSIQGNNTQPSAAPPYGTPTQGTTPWSQHVSRSRRL* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3964 1132 Pfam SPOC domain 733 875 IPR012921 -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 538 571 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 956 979 - -
Mtr3g3964 1132 SUPERFAMILY Elongation factor TFIIS domain 2 392 460 IPR036575 GO:0006351
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 1095 1132 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 884 979 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 599 706 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 508 582 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 30 75 - -
Mtr3g3964 1132 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 55 1112 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 37 64 - -
Mtr3g3964 1132 Pfam Transcription factor S-II (TFIIS), central domain 392 470 IPR003618 GO:0006351
Mtr3g3964 1132 Gene3D - 365 459 IPR036575 GO:0006351
Mtr3g3964 1132 ProSiteProfiles TFIIS central domain profile. 365 484 IPR003618 GO:0006351
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 673 706 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 902 928 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 98 210 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 1095 1126 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 133 203 - -
Mtr3g3964 1132 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 55 1112 - -
Mtr3g3964 1132 SMART mid_6 359 467 IPR003618 GO:0006351
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 644 666 - -
Mtr3g3964 1132 MobiDBLite consensus disorder prediction 225 261 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3964 - - gmx:100808809 1447.57