Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3962 ATGTTGAAGCAATTTCTAAGTAAACTTCCTCGCAAAGCATCAAAACATGACTCGGACGAGTCGTGCAGAGTCGATTCGCACGATTCGCATCGAGTCACCGGTAAAAACAACCGTTCACAAGGCGGCAACGATGGGGGTAAAGCCAACGCCGCGAAAAGGAATTCATCAGCAGCGGTTTTTCCGACAAGCACCGTGTCGTTGATTGAACCGTTGGTGCCGTTTAAGGATGTTCCTAGCTCGGAGAAAATGAACCTCTTTGTAAGCAAGTTGAGTCTTTGTTGCGTTGCGTTTGATTTCACCGATTCTGGTAAGAACGTTGTGGAGAAAGATGTAAAGAGAAGAACATTGGTTGAACTTGTTGATTTTGTTTCTTCTTTTGGGTCTGCAAAGTTTAGTGAGCCAGCTATTCTTGCAATGTGTAGGATGTGTGCTATCAATCTCTTTCGCGTTTTCCCGCCACATTATAGGGCTCATAATCGAATTGGTGGCGGTGAGAATGATGATGATGAACCAGCTTTTGATCCTGCTTGGCCTCATCTTCAACTTGTTTACGAATTGTTGCTTAAATTTATAACATCTTCTTGTCTTGATGCTAAGGTGGCTAAAAAGTATTTTGATCATTCGTTTATTTCGACATTGTTGGAGTTGTTTAATTCGGAGGATCCCAGGGAAAGGGATTGTTTGAAGACAATTATGCATAGGGTTTATGGAAAATTCATGGTTCATAGACCTTATATTCGGAAATCGATTAACTATATGTTTTATAGGTTTGTGTTTGAGACCGAGAAACACAATGGAATTGCTGAGTTGTTGGAGATTTTTGGGAGTATAATAAGTGGATTTGCATTGCCATTGAAAGAAGAACACAAAATTTTCTTGTGGAGAGTTTTGATCCCTTTGCATAAGCCTAGATCTATGGGGGTTTACTTCCAACAATTGTCTTATTGTGTTACACAGTTTATAGAGAAGGAGCCTAAGTTGGCAAGCATTGTGATTAGGGGTTTGTTGAAATATTGGCCAATAACACATAGTCAGAAAGAGGTAATGTTCCTTGGTGAACTTGAAGAAATTTTGGAAACAATTAACATGGTTGAGTTTCAAAGGGTCATGGTACCATTGTTTTGGCGAATTGGATGCTGCATGAGCAGTTTACACTTTCAGGTATCTGAAAGAGCCCTTTACTTATGGAACAATGACCACATTGTCAATTTGATTGCTCACAACCGTCAAGTGATACTACCTATCATATTTCCAGCTCTAGAGAAGAATTTTCACAGCCATTGGAATCCAGCAGTGCTCAACTTAACCCATAATGTTCGAAAGATGTTCAAGGAAATGGATGAGAATCTGTTCCTTACTTGTCGTTCTCAGTTTAAGGAGGAAGAAGCACAGCTAAACTCAGAATCTGAGAAGCGGAATGAAGCATGGAAACAATTAGAACATACAGCCAGTCTCAAGCCTGCAGTCGGAAACACCGCTGTTTTAGTCTCTCCGATTTGA 1500 0.404 MLKQFLSKLPRKASKHDSDESCRVDSHDSHRVTGKNNRSQGGNDGGKANAAKRNSSAAVFPTSTVSLIEPLVPFKDVPSSEKMNLFVSKLSLCCVAFDFTDSGKNVVEKDVKRRTLVELVDFVSSFGSAKFSEPAILAMCRMCAINLFRVFPPHYRAHNRIGGGENDDDEPAFDPAWPHLQLVYELLLKFITSSCLDAKVAKKYFDHSFISTLLELFNSEDPRERDCLKTIMHRVYGKFMVHRPYIRKSINYMFYRFVFETEKHNGIAELLEIFGSIISGFALPLKEEHKIFLWRVLIPLHKPRSMGVYFQQLSYCVTQFIEKEPKLASIVIRGLLKYWPITHSQKEVMFLGELEEILETINMVEFQRVMVPLFWRIGCCMSSLHFQVSERALYLWNNDHIVNLIAHNRQVILPIIFPALEKNFHSHWNPAVLNLTHNVRKMFKEMDENLFLTCRSQFKEEEAQLNSESEKRNEAWKQLEHTASLKPAVGNTAVLVSPI* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3962 499 SUPERFAMILY ARM repeat 84 477 IPR016024 -
Mtr3g3962 499 Gene3D - 78 482 IPR011989 -
Mtr3g3962 499 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 73 483 IPR002554 GO:0000159|GO:0007165|GO:0019888
Mtr3g3962 499 MobiDBLite consensus disorder prediction 10 34 - -
Mtr3g3962 499 MobiDBLite consensus disorder prediction 1 55 - -
Mtr3g3962 499 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 497 - -
Mtr3g3962 499 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 497 IPR002554 GO:0000159|GO:0007165|GO:0019888
Mtr3g3962 499 PIRSF PP2A_B56 4 497 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3962 Mtr-Chr3 53349962 53353133 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3962 K11584 - gmx:100808283 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3962 3 53349962 53353133 Mtr3g3962 3 53349962 53353133 ECH