Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3955 ATGGGTAGTGAGATTGAGATCCCAATTTTGGATTTTCGTAAAAGTAGTGGAGTGACATTAGAAGAAGGCAGTGAAGGGTGGAAAGAAATGAGCAAGAAAGTGAGAGAAGCATTTGAGAGTCATGGTTGCTTCTTCTTAAAGTGTGATGAAATACCAAATGAATTACGTGAAAAAATGTTCACTGGTATGAAATCATTGTTTGATCTACCTGAGGAGACCAAGCAGAAGTTCTCTAACCCAGGGGCTTATAGGGGCTATACAGCCAATAGTCATGTCATTCCCCATTGTCAAAGCTTTGGAATTGATGATGCTCTTAAGCCAGATACGGCTCAAGGCTTCACTAACCTCATGTGGCTCGAAGGAAATCCAACTTTTTGTGAGACACTAAGTTCCCTGACCTCAAAAACACGTGAACTAAGCTTGCTTATCTTGAAGATGGTGGTGGAGGGCTTTGGCCTTCCTGAAAAATACATCTCAGAAGTTGAAGAGTTGAATAACACAAATGATTCACGAATGACTAGGTACCAACTTCCTGAAGACAACAAGCATCTCGAGATTGCTCTAGTACCTCACACCGACAAAGGCTCCCTAGCTCTTATATGCGACAACGATGTCCAAGGTCTACAAGTGTTACCCAAATCAGGCAATTGGGTTGACATAAGTATTCCACCAGATGGTTTTGTGGTAATTGTTGGCGACATGTTGAAGGCATGGAGCAATGGGAGATTTCAGGCTGTTACACATAGAGTGGTGACAAGGGGAGACAAAGAGAGACTTGCTTTTATTCTTTTTGGAGTGCCAAAGGAAGATGCAGTCATTAAGGTGCCCTCTGAGTTGGTGGATGACAAAGATCACCCTCTTCATTATCGCCCATTTAAGTATGAGGAGTTCATAGATTATCATTATTCAACTCGCACTGAAAAGGCAGTACTTGAACAATTCGCTGGACTTTGA 954 0.4214 MGSEIEIPILDFRKSSGVTLEEGSEGWKEMSKKVREAFESHGCFFLKCDEIPNELREKMFTGMKSLFDLPEETKQKFSNPGAYRGYTANSHVIPHCQSFGIDDALKPDTAQGFTNLMWLEGNPTFCETLSSLTSKTRELSLLILKMVVEGFGLPEKYISEVEELNNTNDSRMTRYQLPEDNKHLEIALVPHTDKGSLALICDNDVQGLQVLPKSGNWVDISIPPDGFVVIVGDMLKAWSNGRFQAVTHRVVTRGDKERLAFILFGVPKEDAVIKVPSELVDDKDHPLHYRPFKYEEFIDYHYSTRTEKAVLEQFAGL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3955 317 SUPERFAMILY Clavaminate synthase-like 4 305 - -
Mtr3g3955 317 Pfam 2OG-Fe(II) oxygenase superfamily 169 264 IPR044861 -
Mtr3g3955 317 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE AOP1-RELATED 4 316 - -
Mtr3g3955 317 Pfam non-haem dioxygenase in morphine synthesis N-terminal 7 88 IPR026992 -
Mtr3g3955 317 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 316 - -
Mtr3g3955 317 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 166 267 IPR005123 -
Mtr3g3955 317 Gene3D - 5 315 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3955 Mtr-Chr3 53286574 53288804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3955 3 297 Glycosyltransferase AT5G59530 23.871 1.01e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3955 - - mtr:MTR_4g021380 445.277