Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3943 ATGATGGGTACTGTTTGTGCTAGATACCCATTTGTAATCCCTTTCCATTCCCAAACCCTAACTCGCAGATTGGATTGCTCAATCTCCCAATTCCCCCTTTCCAGAATCACATATTCTTCTTCTTCTAGAATCTTAATTCATCGAGTATGTTCACGACCTGATATTGATGATTTCTACTGGGAGAAAGTTCCAACACCCATTCTTGACACAGTTCAAAACCCTCTTTGCTTGAAGAACCTTTCTCAGCAAGAGTTGAAACAACTAGCTGCTGAAATCCGTTTAGAGTTGTCTTCTATTTTGTCGGGCACGCAAATATTACTGAATCCTAGTATGGCTGTGGTGGACCTCACAGTTGCAATACATCATGTTTTTCATGCTCCAGTTGACAAGATTTTGTGGGATGTCGGTGATCAAACATATGCGCATAAGATACTTACAGGACGGAGATCGCTCATGAAGACAATAAGAAAAAAGAATGGTCTTTCTGGTTTTACTTCTCGATTTGAGAGTGAATACGATGCATTTGGTGCTGGTCATGGATGCAACAGTATTTCTGCCGGACTTGGAATGGCTGTTGCGAGGGATATTAAAGGGAGACGAGAACGTGTAGTTGCAGTTATCAGCAATTGGACAACTATGTCTGGCCAGGTCTATGAGGCAATGAGCAATGCAGGTTATTTGGACTCAAATTTGGTGGTGATTTTGAACGATAGCCGCCACTCTTTACTCCCAAAAATTGAGGACGGCTCGAAAACCTCTGTCAATGCTCTATCCAGTACCCTTAGCAGGCTCCAATCCAGTAAATCTTTCCGAAAATTTAGAGAAGCTGCTAAGGGTGTTACAAAACGTATTGGCAGAGGCATGCATGAATTAGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATGGGTCCACCAGGTTCTACTCTATTTGAAGAGCTTGGGTTGTATTACATAGGCCCAGTGGATGGACACAATATCGAAGATCTGATAAGTGTTCTTCAAGAAGTAGCTTCCCTGGATTCAATGGGCCCTGTCTTGATTCATGTTATAACTAATGAAAATCAGGTTGAAGAACACAATAAAAAAAGTTACATGACAGACAAGCAGCAGGATGAATCGGTTAGTTTTGATTTGTTAGACAATGCTGGTCGGCTTCAAACATATGGTGATTGCTTTGTGGAGAGTTTGGTAGCCGAAGCTGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGAATCACGACAGAGCCATCGCTTAAACTGTTTATGGAAAAATTTCCAGATAGGATTTTTAATGTGGGAATTGCTGAGCAACACGCTGTCACATTTGCTTCTGGTTTATCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTTTACAGAGAGCCTATGACCAGGTGGTTCACGATGTTGATCAACAGAAAGTTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTAGGTTCAGATGGTCCCCTCCAGTGTGGAGCATTTGATATAACGTTCATGTCATGCTTACCAAATATGATTGTCATGGCACCATCTGATGAGGCTGAACTTGTGCACATGGTGGCGACTGCTGCTCATATCAATGACCAACCAGTTTGCTTTCGGTATCCTAGGGGTGCCTTGGTTGGGAAAGACGAAGCTATACTTGATGGAATTCCAATTGAGATTGGAAAGGGAAGAATTCTTGTTGAAGGTAAAGATGTTGCCTTATTGGGATATGGATCAATGGTTCAGAACTGTCTAAAGGCTTATTCACTTCTTGCAAATCTTGGCATTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAACCCCTTGACATCGAGCTTCTGAGGCAGCTTTGTAAACACCATTCTTTTCTAATTACCGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCTCAATTTATTGCTCTTGATGGACTTCTCGACCGAAGAATTAAGTGGCGACCAATTGTCTTACCAGATAGTTATATTGAACATGCATCACCAAATCAACAGCTTAACCAAGCAGGGTTGACTGGACATCACATTGCTGCCACAGCATTGAGTTTGCTGGGCCGTACCCGTGAAGCACTATCCTTTATGTGTTTGTGA 2127 0.4222 MMGTVCARYPFVIPFHSQTLTRRLDCSISQFPLSRITYSSSSRILIHRVCSRPDIDDFYWEKVPTPILDTVQNPLCLKNLSQQELKQLAAEIRLELSSILSGTQILLNPSMAVVDLTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTIRKKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMSGQVYEAMSNAGYLDSNLVVILNDSRHSLLPKIEDGSKTSVNALSSTLSRLQSSKSFRKFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPPGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLDSMGPVLIHVITNENQVEEHNKKSYMTDKQQDESVSFDLLDNAGRLQTYGDCFVESLVAEAEKDKDIVVVHAGITTEPSLKLFMEKFPDRIFNVGIAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKVPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEAELVHMVATAAHINDQPVCFRYPRGALVGKDEAILDGIPIEIGKGRILVEGKDVALLGYGSMVQNCLKAYSLLANLGIEVTVADARFCKPLDIELLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDRRIKWRPIVLPDSYIEHASPNQQLNQAGLTGHHIAATALSLLGRTREALSFMCL* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3943 708 CDD TPP_PYR_DXS_TK_like 393 546 - -
Mtr3g3943 708 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 67 697 IPR005477 GO:0008661|GO:0016114
Mtr3g3943 708 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 22 707 - -
Mtr3g3943 708 SUPERFAMILY TK C-terminal domain-like 560 696 IPR009014 GO:0003824
Mtr3g3943 708 CDD TPP_DXS 107 352 IPR005477 GO:0008661|GO:0016114
Mtr3g3943 708 Pfam Transketolase, pyrimidine binding domain 389 549 IPR005475 -
Mtr3g3943 708 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 70 694 IPR005477 GO:0008661|GO:0016114
Mtr3g3943 708 Gene3D - 60 356 - -
Mtr3g3943 708 Gene3D - 565 696 IPR009014 GO:0003824
Mtr3g3943 708 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 65 448 IPR029061 -
Mtr3g3943 708 Gene3D - 386 558 - -
Mtr3g3943 708 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 22 707 IPR005477 GO:0008661|GO:0016114
Mtr3g3943 708 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 68 352 IPR005477 GO:0008661|GO:0016114
Mtr3g3943 708 Pfam Transketolase, C-terminal domain 565 688 IPR033248 -
Mtr3g3943 708 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 385 575 IPR029061 -
Mtr3g3943 708 SMART Transket_pyr_3 387 552 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3943 Mtr-Chr3 53166933 53172917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3943 425 647 Acyl Lipid Metabolism Gene Families AT3G13450 25.941 2.33e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3943 K01662 - gmx:100793268 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3943 3 53166933 53172917 Mtr3g3943 3 53166933 53172917 ECH