Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3940 ATGGCTTTGCCCAATCAGCAAACCGTTGATTACCCTAGCTTCAAGCTTGTCATCGTCGGCGATGGTGGCACAGGAAAAACAACATTCGTGAAGAGGCATCTTACTGGAGAGTTTGAGAAGAAATATGAACCTACAATTGGTGTGGAAGTGCATCCATTGGATTTCTTCACAAACTGCGGCAAGATTCGCTTCTACTGCTGGGATACTGCTGGACAAGAGAAGTTTGGTGGTCTCAGAGATGGATACTATATCCATGGGCAGTGTGCGATTATAATGTTTGATGTTACTGCCCGACTGACTTACAAGAATGTCCCTACCTGGCACCGTGACCTTTGCCGTGTTTGTGAAAACATCCCTATTGTTCTTTGCGGCAACAAGGTTGATGTGAAGAACAGACAAGTAAAGGCAAAGCAGGTTACCTTCCACAGAAAAAAGAATTTGCAGTACTATGAGATTTCAGCTAAGAGCAACTATAACTTTGAGAAGCCTTTCTTGTACCTAGCCAGGAAACTTGCAGGTGATCCTAACTTGCACTTTGTAGAATCTCCTGCACTGGCTCCACCAGAAGTTCAAATCGATTTGGTTGCACAACAACAACATGAGAATGAGCTTCAACAAGCTGCTAACCAACCACTTCCTGATGATGACGACGATGCATTTGAGTAG 666 0.4414 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLVAQQQHENELQQAANQPLPDDDDDAFE* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3940 221 SMART ran_sub_2 19 220 - -
Mtr3g3940 221 SMART ras_sub_4 11 174 - -
Mtr3g3940 221 CDD Ran 14 179 - -
Mtr3g3940 221 Pfam Ras family 15 171 IPR001806 GO:0003924|GO:0005525
Mtr3g3940 221 TIGRFAM small_GTP: small GTP-binding protein domain 14 164 IPR005225 GO:0005525
Mtr3g3940 221 Gene3D - 4 219 IPR027417 -
Mtr3g3940 221 SMART rab_sub_5 14 174 - -
Mtr3g3940 221 ProSiteProfiles small GTPase Ras family profile. 5 221 IPR001806 GO:0003924|GO:0005525
Mtr3g3940 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Mtr3g3940 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 74 92 IPR002041 GO:0003924|GO:0005525|GO:0006913
Mtr3g3940 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 94 115 IPR002041 GO:0003924|GO:0005525|GO:0006913
Mtr3g3940 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 130 148 IPR002041 GO:0003924|GO:0005525|GO:0006913
Mtr3g3940 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 168 190 IPR002041 GO:0003924|GO:0005525|GO:0006913
Mtr3g3940 221 ProSiteProfiles small GTPase Rab1 family profile. 8 221 - -
Mtr3g3940 221 MobiDBLite consensus disorder prediction 198 221 - -
Mtr3g3940 221 PANTHER RAN GTPASE 1 221 IPR002041 GO:0003924|GO:0005525|GO:0006913
Mtr3g3940 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 200 IPR027417 -
Mtr3g3940 221 PANTHER GTP-BINDING NUCLEAR PROTEIN 1 221 - -
Mtr3g3940 221 ProSiteProfiles small GTPase Ran family profile. 7 171 IPR002041 GO:0003924|GO:0005525|GO:0006913
Mtr3g3940 221 SMART rho_sub_3 16 170 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3940 Mtr-Chr3 53149248 53152584 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3940 K07936 - han:110898535 457.603