Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3926 ATGGAAGCCTCTTCCGGCATGGTTGCTGGCTCCCACAATCGTAACGAGCTTGTTCGTATTCGTCACGATTCTGCCGACAGCGGGCCGAAACCATTGAAGAATTTGAATGGACAAGTCTGTCATATATGTGGTGAGGATGTTGGAACAACACCCACCGGTGATGTGTTTGTGGCTTGTAATGAATGTGGTTACCCTGTTTGTCGAGATTGTTATGAATATGAGCGAAAAGAAGGCAATAAATCTTGTCCTCAATGCAAAACTAGATACAAAAGGCTCAGAGGGAGTCCTAGAGTGGATGGAGACGATGAAGAAGACGATGTTGATGATATCGAGAACGAGTTCAATTATCGACAAGGAAATAATAATAATAATAAGTCAAGGAGACAGTGGGATGATTCAGACAGATCAGCTTCATCTTCTAGACGCGAATATCAGCAACCTCCTCTTCTCACCAATGGCCAAACTATGTCTGGCGAGATCCCTACACCTGATAATCAATCTGTCCGAACTACTTCTGGTCCTTTGGGCCCATCTGAGAAAGCTCACTCACTTCCCTATATCGATCCAAGGCAACCAGTTCCGGTGAGAATTGTGGATCCATCAAAGGACTTAAACTCATATGGTTTGGGAAACGTTGACTGGAAGGAAAGGGTTGAAGGTTGGAAGCTGAAGCACGAGAAAAATATGGTACAGATGACCGGTAGATATGCTGATGGGAAAAGCGGAGGAGGAGATATTGAAGGGACTGGTTCTAATGGAGAAGAACTTCAAATGGTTGATGATGCTCGACAACCTATGAGTCGGATTGTACCTATTTCTTCATCTCAGCTGACCCCTTATCGTGTTGTCATCGTGTTCCGGCTGATAGTTCTTGGTTTCTTCTTGCAATATCGTGTAACTCACCCGGTAAAAGATGCTTACCCACTGTGGTTGACTTCAGTTATCTGTGAGATTTGGTTTGCATTTTCCTGGATTTTGGATCAGTTTCCAAAATGGTCTCCCATTAACCGTGAGACTTATCTGGAGAGGCTTGCCATAAGATATGATCGTGATGGAGAGCCATCACAGTTGGCTCCTGTTGACGTATTTGTCAGTACAGTGGACCCTCTCAAAGAGCCACCTATTGTAACTGCAAACACTGTTTTGTCTATACTTGCCGTTGATTACCCTGTCGACAAGGTTTCTTGCTATGTATCTGATGATGGTTCAGCTATGTTGAGTTTTGAAGCCTTATCTGAAACAGCCGAGTTTGCAAAGATGTGGGTGCCCTTTTGCAAAAAACACAGTATTGAGCCAAGAGCACCTGAATTTTATTTTCTTCAGAAGATTGATTACTTAAAGGACAAGGTTCAACCCTCTTTTGTTAAGGAGCGACGAGCAATGAAGAGACAATATGAAGAATTCAAAGTAAGGATCAATGCCTATGTGGCCAAAGCTCAGAAGATGCCAGAGGAAGGTTGGACAATGCAGGATGGAACTCCTTGGCCTGGAAATAATCCCAGGGATCATCCTGGAATGATTCAGGTGTTTTTAGGTCATAGTGGAGGGCTTGATACAGATGGCAATGAACTTCCCAGGCTTGTTTATGTGTCTCGTGAAAAGCGACCAGGCTTCCAACATCACAAGAAGGCTGGAGCTATGAATGCTTTGATTCGAGTTTCTGCTGTCTTGACCAACGGTGCATATCTTTTGAATGTCGATTGTGATCATTATTTCAATAATAGCAAAGCTCTTAAGGAGGCTATGTGTTTCATGATGGATCCTGCTTACGGAAAGAAGACATGCTATGTTCAATTTCCGCAGAGATTTGATGGCATTGATTTGCACGATCGATATGCCAATCGCAATATTGTCTTCTTCGATATCAACTTGAAAGGCCAGGATGGTATTCAGGGCCCTGTCTATGTGGGAACTGGTTGCTGTTTCAATAGGCAAGCTTTGTATGGTTATGATCCTGTTTTGACTGAGGAAGATCTCGAACCTAACATTATTGTTAAGAGTTGTTGGGGTTCTAGAAAGAAAGGAAAGGGTGGGAATAAGAAGTACGGTGACAAGAAGAGGGGAGTTAAAAGAACTGAATCCACCATTCCTATATTTAATATGGAGGATATAGAGGAGGGTGTCGAAGGTTATGATGATGAAAGGTCACTACTAATGTCTCAGAAGAGCTTGGAGAAGCGTTTCGGACAGTCTCCAGTTTTTATTGCTGCCACATTCATGGAGCAAGGTGGCCTTCCACCTTCAACCAATTCTACAACTCTTCTTAAGGAAGCAATCCATGTTATCAGCTGTGGTTATGAAGACAAGACAGAATGGGGCAAAGAGATTGGATGGATCTATGGTTCTGTGACTGAAGATATCCTGACTGGGTTTAAGATGCATGCACGTGGTTGGATTTCCGTCTATTGCATGCCACCTCGTCCAGCATTTAAGGGTTCTGCTCCCATCAATCTTTCAGACCGTCTCAATCAGGTGCTTCGGTGGGCCTTGGGTTCAATAGAGATCTTCCTTAGCAGGCATTGTCCTTTATGGTATGGCTACAATGGAAGGATGAGGCCTCTCATGAGGCTGGCTTATATCAACACAATTATCTACCCCTTTACCTCAATCCCATTGCTTGCGTACTGTGTGCTTCCTGCATTTTGTCTTCTCACAAACAAATTTATTATTCCCGAGATAAGTAACTTTGCAAGCATGTGGTTTATTCTCCTCTTTACCTCCATTTTCACTACTTCAATTCTGGAGCTTAGGTGGAGTGGTGTTGGTATAGAAGACTGGTGGAGAAACGAGCAGTTTTGGGTTATCGGTGGAACATCTGCACATCTTTTCGCCGTGTTCCAAGGGCTTCTCAAAGTGCTTGCAGGGATTGACACAAATTTTACCGTTACATCAAAGGCAAATGACGAAGACGGGGACTTTGCCGAGCTATACGTGTTCAAATGGACATCACTTCTTATCCCTCCTACAACAGTACTTATTGTGAATTTGATAGGTATTGTGGCTGGTGTGTCTTTTGCCATAAACAGTGGTTACCAATCTTGGGGTCCACTATTTGGAAAGCTCTTCTTTGCTATATGGGTCATTGCTCATTTATACCCTTTCTTGAAGGGTCTTTTGGGGAAATCGAATCGCACACCAACTATTGTTATTGTCTGGGCCGTTCTCCTTGCTTCTATATTCTCTTTGTTGTGGGTGAGGATTGACCCCTTCATCTCTGATCCCAACAAATCATCATCCAATAGTCAGTGTGGTATCAACTGCTAG 3264 0.4338 MEASSGMVAGSHNRNELVRIRHDSADSGPKPLKNLNGQVCHICGEDVGTTPTGDVFVACNECGYPVCRDCYEYERKEGNKSCPQCKTRYKRLRGSPRVDGDDEEDDVDDIENEFNYRQGNNNNNKSRRQWDDSDRSASSSRREYQQPPLLTNGQTMSGEIPTPDNQSVRTTSGPLGPSEKAHSLPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKHEKNMVQMTGRYADGKSGGGDIEGTGSNGEELQMVDDARQPMSRIVPISSSQLTPYRVVIVFRLIVLGFFLQYRVTHPVKDAYPLWLTSVICEIWFAFSWILDQFPKWSPINRETYLERLAIRYDRDGEPSQLAPVDVFVSTVDPLKEPPIVTANTVLSILAVDYPVDKVSCYVSDDGSAMLSFEALSETAEFAKMWVPFCKKHSIEPRAPEFYFLQKIDYLKDKVQPSFVKERRAMKRQYEEFKVRINAYVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGQDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCWGSRKKGKGGNKKYGDKKRGVKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGLPPSTNSTTLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISVYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFLSRHCPLWYGYNGRMRPLMRLAYINTIIYPFTSIPLLAYCVLPAFCLLTNKFIIPEISNFASMWFILLFTSIFTTSILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYVFKWTSLLIPPTTVLIVNLIGIVAGVSFAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGKSNRTPTIVIVWAVLLASIFSLLWVRIDPFISDPNKSSSNSQCGINC* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3926 1087 SUPERFAMILY RING/U-box 25 112 - -
Mtr3g3926 1087 Pfam Zinc-binding RING-finger 30 107 IPR027934 -
Mtr3g3926 1087 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 518 660 IPR029044 -
Mtr3g3926 1087 SUPERFAMILY Nucleotide-diphospho-sugar transferases 378 660 IPR029044 -
Mtr3g3926 1087 Pfam Cellulose synthase 360 1078 IPR005150 GO:0016020|GO:0016760|GO:0030244
Mtr3g3926 1087 MobiDBLite consensus disorder prediction 113 199 - -
Mtr3g3926 1087 CDD mRING-HC-C4C4_CesA_plant 38 88 - -
Mtr3g3926 1087 SMART ring_2 40 85 IPR001841 -
Mtr3g3926 1087 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 21 1087 - -
Mtr3g3926 1087 MobiDBLite consensus disorder prediction 140 177 - -
Mtr3g3926 1087 PANTHER CELLULOSE SYNTHASE 21 1087 - -
Mtr3g3926 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Mtr3g3926 1087 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3926 Mtr-Chr3 53042329 53048718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3926 1 1085 Glycosyltransferase AT4G32410 84.177 0.0 1868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3926 K10999 - gmx:100810567 2026.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3926 3 53042329 53048718 Mtr3g3926 3 53042329 53048718 ECH