Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3916 ATGGATTTAGAAGGAAGTGTAAAAGATTCAGTGCTTACTACTACTCAAGTCAGCATCGGTGGATTTGACTCTGATGTCAAAGCTTCTGATTTGGTGTCATACTTGGAATCCAAGATCGGATATGTTGATAGATGTCGGCTGAAGACTTCTTGTACTCCTCCGGAGTCATATCCAGAATTTACTATGACTGATACAAAACAGATAGAAATTACGGATGACTATAAGAAGGTGGCACCTCATGCCTTTGTGCATTTTACTTTGCCGGATTCTGCAACTGAGGCCCTCAATGCTGCAGGTCGCTGTGACCTAATTTTGAATGGTAAGGTGTTAAAGGTCATCAGTGGGCCACAAAATCCAAACTTCCTGAACCAAAGGAGGCGAACTGAAGCTCCTTTTAAGATGTCGGATGTAATCGTTGAAATTGGGACTTTGGTTAGCCCGGCGGATTTTACTGTTGCTTGGAGAGGGTGCGATAAAGGGGTAAACTTTCTAGTGGACCCTTTTGACAAAATATGCAAGATTTGTTTCAATAGGGATACTGCATTCTCATTCAAAGGAATAGGTAAACAAGCAGTGATAAAATGTGATTTTAAGGTGGGATTCTTGATTAGAGACATAGAGGAGATCCAAAGATATGATGATACTTCGCATCTTGTTGTTTTATTACGCCTAGCTTCGTCACCGTTGGTTTGGTACAGAACTGCCGATGACGACATTGATGAATCGGTCACAATTGATTTGTTAGACGACGATGATCCTTGGATCAGGACCACAGACTTTACCCCCAGTGGAGCCATTGGACGATGCAATTATTATAGAATATCAATCCCACCACGTCATGGTGCCAAATTGAACAAGGCCTTGGAATATTTGAGACGCCAAAGAGTGCCACGGATTCCGCTTAAACGGCCACCTAAGATACAAAATGAACCTGATTTTGGGGTTCCCATGTCAGATGCTTTCTTCTACATAGATTCTCAGAAGGACATTTCTTTTGATATAATGTTCTTGATTAATGCAATTGTACACAGAGGAATATTCAATCAGTATAGTTTATCAAACAAGTTTTTTGAATTGCTGAAAAACCAACCTAAGGATGTCAACGTGGCTGCTCTGAAGCACATATGTACTTACAAGCACCCAGTGTTTGATGCAGCTAAGAGACTAGAAGCAGTCCAAAAATGGTTGCTCAGAAATCCAAAATTTTATCAGATCTCCAAGCAGTCCGATGATGTTATGGAGGTTAGAAGGCTAGTTGTTACCCCAACAAAAGCCTATTGTATATCACCAGAAGTTGAATTGTCCAATAGAGTCCTCAGAAGATTTAGAGAAGTTTCAGACCGATTCTTGAGAGTCACCTTTATGGATGAAGGACAGCAAACACTTAATAATTATGCTCTTAACTATTATGTTGCTCCCATTGTGAAGGAAATCACATCAAACTCCTTCCAACAGAAGACGAGAATATATAAAAGGGTGAAGACAATCCTGGATGACGGGTTTTACTTTTGTGGCCGAAAATATTCATTTTTAGCTTTTTCATCCAATCAACTTAGAGATCGTTCTGCTTGGTTTTTTGCTGAGGACAAGGACATAACTTGTGATGATATAAGAAATTGGATGGGTAGGTTTAATCAGAAGAATGTTGCAAAGTGTGCGGCTAGGATGGGGCAATGCTTCTCATCCACATATGCATCAGTAGAAGTTCCTGCGAATGAAGTTAACTCGATGCTCCCTGATGTGGAGAGGAATAATTATGTTTTCTCTGATGGCATTGGTATTATCACTACGGATCTTGCAGTTGAAGTTGCTGAAAAATTGAAATTGGACAAGGCACCCTCGGCTTACCAGATCAGGTATGCTGGTTTTAAAGGGGTTGTAGCCTGCTGGCCCGCTAAAGGGGATGGAATCAAGCTTTCTTTGAGACCCAGCATGAACAAGTTTCAATCCACTCATACTACCTTGGAGATCTGTGCCTGGACTAGGTTTCAACCTGGTTTTCTTAACAGGCAGATTATAACATTGCTTTCAGCTCTGGATGTGCCTGATGAAATATTCTGGAAAATGCAGGAGGGAATGATTTCAAGTTTAAATCAAATGCTGGTTGATCGAGACGTGGCCTATGATGTTCTAACCAAGTCTTGTGCCGAGCATGGAAACGCTGCAGCAATAATGTTAAGTTGTGGCTTCAGTCCCAAAACAGAACCTCATCTTAGAGGCATGCTAAACTCTATACGTGCTGCACAACTTTGGGGCCTTAGAGAAAAGTCTAGGATTTTTGTTTCATCAGGCAGATGGTTGATGGGCGTCTTAGATGAGTTGGGTGTGCTTGAACAAGGGCAATGCTTTGTTCAAGTGTCTACTCCTTCTCTTGAAAATTGTTTCTCAAAGCACGGCTCAAGATTTTCAGAGACCAAAACCGTGCACGTGGTTAAAGGTATAGTGGTTATAGCCAAAAATCCATGTCTTCACCCTGGAGATGTGAGAGTTTTGGAGGCAGTCGATGTCCCGGATTTGCATCATTTATATGACTGTGTTGTTTTCCCTCAAAAGGGCGAAAGACCCCATACAGATGAAGCTTCTGGAAGTGACCTTGACGGGGATCTTTATTTTGTCACTTGGGATGGAAATCTCATTCCACCAAGTAAGAGGAGCTGGCCACCTATGGAGTATGCGGCTCAAGAAAGCCGGCTTCAAACACGGCAAGTCACTGTCCAGGACATCATAGATTTTTTTGTCAGAAACATGGTGAATGAGCAGTTGGGTTCAATTTGCAATGCACATGTGGTACATGCTGATTCCAGTGACTACGGTGCCTTGGATGAGAACTGCGTACACTTAGCTGAGTTAGCAGCTACCGCAGTTGATTTTCCGAAGACCGGTAAGCTTGTCACCATGCCCTCAAATCTGAAACCGAAACTGTACCCTGATTTTATGGGGAAAGAGCACCATCAATCATACAAGTCCAAAAAAATCCTGGGGAGACTTTACCGGAGGATTAAAGATGCGTATGATAAAGATATTGATGCTCCTGAATTCAACTGTGTGTCAAGTGATATACTTTATGATACAGATCTTGAGGTTCCAGGATCTTCTGAATTCATTGCTGATGCATGGGAGCAAAGGTGCTCTTATGATGGCCAGTTAAGTGGATTACTGGGTCAATACAAAGTGAAAACAGAAGAAGAAGTTGTCACTGGACAGATCTGGTCCATGCCAAAATACAACAGTAGGAAGCAAGGGGAACTTAAGGAGAGGCTGAAGCACTCGTACAGTGCACTGAAAAAAGAATTTAGGCAAATTTTTGAGAAACTGAAGTCAGATGTTGGAGAATTAAGCGATAAAGAAAAAAATTTGTTGTATGAACAAAAAGCTTCGGCCTGGTATCAGGTGACATATCATCCTAAATGGGTGAAGAAATCCCTTGATTTGCAGCTTAAATCCTCAGATAATCAGAGTGCAGATAGTTTGGGGAATATGGTGATGTTGAGTTTTCCATGGATTGCAGTTGATTACCTTGCTTGCACAAAGACAAGGCATCGGAGAGTTAAAGATTTTGACTCAACCAAGCAAGTTGATTCTCTGGCGAAGTATCTATCTGAAAGGTTATAG 3612 0.4161 MDLEGSVKDSVLTTTQVSIGGFDSDVKASDLVSYLESKIGYVDRCRLKTSCTPPESYPEFTMTDTKQIEITDDYKKVAPHAFVHFTLPDSATEALNAAGRCDLILNGKVLKVISGPQNPNFLNQRRRTEAPFKMSDVIVEIGTLVSPADFTVAWRGCDKGVNFLVDPFDKICKICFNRDTAFSFKGIGKQAVIKCDFKVGFLIRDIEEIQRYDDTSHLVVLLRLASSPLVWYRTADDDIDESVTIDLLDDDDPWIRTTDFTPSGAIGRCNYYRISIPPRHGAKLNKALEYLRRQRVPRIPLKRPPKIQNEPDFGVPMSDAFFYIDSQKDISFDIMFLINAIVHRGIFNQYSLSNKFFELLKNQPKDVNVAALKHICTYKHPVFDAAKRLEAVQKWLLRNPKFYQISKQSDDVMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRFNQKNVAKCAARMGQCFSSTYASVEVPANEVNSMLPDVERNNYVFSDGIGIITTDLAVEVAEKLKLDKAPSAYQIRYAGFKGVVACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIFWKMQEGMISSLNQMLVDRDVAYDVLTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKTVHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFPQKGERPHTDEASGSDLDGDLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQLGSICNAHVVHADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSYKSKKILGRLYRRIKDAYDKDIDAPEFNCVSSDILYDTDLEVPGSSEFIADAWEQRCSYDGQLSGLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQIFEKLKSDVGELSDKEKNLLYEQKASAWYQVTYHPKWVKKSLDLQLKSSDNQSADSLGNMVMLSFPWIAVDYLACTKTRHRRVKDFDSTKQVDSLAKYLSERL* 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3916 1203 PANTHER RNA-DEPENDENT RNA POLYMERASE 12 1202 IPR007855 GO:0003968
Mtr3g3916 1203 SUPERFAMILY RNA-binding domain, RBD 10 120 IPR035979 GO:0003676
Mtr3g3916 1203 CDD RRM_SF 17 112 - -
Mtr3g3916 1203 Pfam RNA dependent RNA polymerase 420 1000 IPR007855 GO:0003968
Mtr3g3916 1203 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 12 1202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3916 Mtr-Chr3 52990035 52995231 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3916 K11699 - gmx:100795178 2033.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3916 3 52990035 52995231 Mtr3g3916 3 52990035 52995231 ECH