Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3901 ATGACTTCGAGCACAATCCGAAAAGCTATTGGAGCGGTGAAGGATCAGACGAGTATTGGAATAGCGAAAGTCGCGAGCAACATGGCGCCGGAATTGGAGGTGGCGATTGTGAAAGCGACGAGTCACGACGAAGATCCAGCGAGTGAGAAGTATATAAGAGAGATCTTGAACTTGATGTCTTACTCGCGTGGTTATGTTAACGCCTGTGTTTCAGCTGTGTCCAAGCGATTGGGGAAGACGCGTGATTGGATTGTTGCGTTGAAAGCTCTTATACTTGTTCATCGACTGATGAATGATGGAACACCGATTTTCCAGGAAGAGATTATGTATGCTACAAGGAGAGGGACTAGGTTGTTGAATATGTCTGATTTTAGAGATGAGGCTCATTCAAGCTCCTGGGATCATTCTGCTTTTGTTAGGACTTATGCTTTGTATCTTGATCAGAGGCTTGAGTTGATGTTGTTTGATAGAAAAGCTGGTAGTGTTGGTGTTGGTGGTGGAGGTGGGGATGAGAGGTTTGGTGGGAGGGAAAATAATTTCAGGTCGCCGCCGAATGAGTATGAGTATGGAGGTGGACAATTTAGAGGGGAAGGTGGGATGAGGAAGACGAGGTCGTATGGTGATGTGAATGAAGCGTCTGGGAATGATGATAGAAGGATTGTTACTGTGACCCCTTTGAGAGATATGAAGCCGGAGAGGATTTTCGGGAAGATGAGTCATTTGCAGAGGCTTTTGGATCGTTTCTTGGCTTGTAGGCCAACTGGGTTGGCTAAGAACAATAGGATGATTTTGATTGCGTTGTATCCGTTGGTTAAGGAAAGTTTTCAGTTGTATGCTGATATATGTGAGGTTTTGGCAGTGTTGCTTGACAAATTCTTTGATATGGAGTATCCTGATTGTGTCAAGGCCTTTGATGCTTATGCAAGTGCTGCTAAACAGATTGATGAACTTGTGGCATTTTACAATTGGTGTAAAGAGAGTGGTTTGGCGAGATCCTCCGAGTATCCAGAAGTTCAGAGAATTACTAGTAAGTTGTTGGAGACACTGGAGGAGTTTGTGAGGGATAGGGCTAAGAGGCCAAAGAGTCCAGAGAGGAAAGAGGAAGCTCCTAAGCTGGAAGTACAAGAGGAGGAGCCGGTCCCGGATATGAACGAGATCAAGGCACTGCCTGCACCTGAGAATTATACCCCGCCTCCTCCACCAGAGCCTGAGCCTGAGCCAAAGCCGCAGTTTACGGAGGACTTGGTGAATCTGAGAGAGGATGCAGTCACTGCAGACGATCAGGGTAATAGATTTGCTTTGGCACTCTTTGCTGGTGCACCAGCTAATAATAATGCAAATGGATCGTGGGAAGCCTTTCCATCAAATGGACAGCCGGAAGTAACTTCAGCTTGGCAAACCCCTGCCGCTGAACCTGGGAAAGCTGATTGGGAATTGGCATTGGTTGAGACAGCCAGCAATTTATCTAGGCAGAAGAATGCTTTAGGTGGTGGGCTTGATCCCTTATTGTTGAATGGCATGTATGATCAAGGAATGGTGAGGCAGCATGTGAGCACTTCTCAACTTAGTGGAGGGAGTGCTAGCAGTGTGGCGTTGCCGGCACCGGGAAAGACCACAACACCTGTTTTAGCTCTCCCAGCCCCAGATGGATCTGTGCAGCCAGTTAATCAGGATCCGTTCGCTGCATCCTTGAACATTCCACCTCCCTCCTATGTGCAAATGGCCGAAATGGAGAAGAAGCAACAATTACTTGTGCATGAGCAGCAGCTGTGGCATCAGTATGCAAGAGATGGGATGCAAGGCCAGTCTAGCTTGAACAAAATGAACAATGGTACTGGATACTATGCTGGAGGTCCTATGCCTTACGGAATGCCCCCAGTTCACGGAATGGGACCTCCAAACGGGTATTACCATACTCCTATATGA 1926 0.472 MTSSTIRKAIGAVKDQTSIGIAKVASNMAPELEVAIVKATSHDEDPASEKYIREILNLMSYSRGYVNACVSAVSKRLGKTRDWIVALKALILVHRLMNDGTPIFQEEIMYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYALYLDQRLELMLFDRKAGSVGVGGGGGDERFGGRENNFRSPPNEYEYGGGQFRGEGGMRKTRSYGDVNEASGNDDRRIVTVTPLRDMKPERIFGKMSHLQRLLDRFLACRPTGLAKNNRMILIALYPLVKESFQLYADICEVLAVLLDKFFDMEYPDCVKAFDAYASAAKQIDELVAFYNWCKESGLARSSEYPEVQRITSKLLETLEEFVRDRAKRPKSPERKEEAPKLEVQEEEPVPDMNEIKALPAPENYTPPPPPEPEPEPKPQFTEDLVNLREDAVTADDQGNRFALALFAGAPANNNANGSWEAFPSNGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKNALGGGLDPLLLNGMYDQGMVRQHVSTSQLSGGSASSVALPAPGKTTTPVLALPAPDGSVQPVNQDPFAASLNIPPPSYVQMAEMEKKQQLLVHEQQLWHQYARDGMQGQSSLNKMNNGTGYYAGGPMPYGMPPVHGMGPPNGYYHTPI* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3901 641 SMART enth_2 30 160 IPR013809 -
Mtr3g3901 641 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Mtr3g3901 641 Gene3D - 3 156 IPR008942 -
Mtr3g3901 641 Pfam ANTH domain 31 355 IPR011417 GO:0005543
Mtr3g3901 641 MobiDBLite consensus disorder prediction 356 410 - -
Mtr3g3901 641 MobiDBLite consensus disorder prediction 356 383 - -
Mtr3g3901 641 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 620 IPR045192 GO:0048268|GO:0072583
Mtr3g3901 641 Gene3D ANTH domain 218 367 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Mtr3g3901 641 PANTHER ENTH/ANTH/VHS SUPERFAMILY PROTEIN-RELATED 1 620 - -
Mtr3g3901 641 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Mtr3g3901 641 MobiDBLite consensus disorder prediction 166 194 - -
Mtr3g3901 641 CDD ANTH_N_AP180_plant 32 152 - -
Mtr3g3901 641 MobiDBLite consensus disorder prediction 392 406 - -
Mtr3g3901 641 SUPERFAMILY GAT-like domain 225 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3901 Mtr-Chr3 52854780 52857541 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3901 - - gmx:100787076 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3901 3 52854780 52857541 Mtr3g3901 3 52854780 52857541 ECH