Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3893 ATGAAGTGTTCATCCGAAGCAGTCTCTTCTCTATCTCTATCATCCGTACCATCATCATCGTTCACTGACCAATCACAACCTGCCACGTCATCATCATCTTCTTCTTCCGCCGCGGCGGCGGAAGACCTCGCAATAGGTTCACGCGACGGAGGAAGCGCTTTGGAGACGGTGGTGGTGGATCGGAGAAACGAGTACAGCGCTGTATGCAAATGGACGGTAAATAATTTTCCGAAGGTAAAAGCTAGGGCACTGTGGAGTAAGTATTTTGAGGTAGGTGGTTACGATTGTCGCTTATTGATATATCCTAAAGGCGATTCACAAGCTTTACCTGGTTACATCTCAGTTTATCTTAAAATCATGGACCCTCGTGGAACTTCTTCTTCTAAATGGGACTGTTTTGCTAGCTATCGTTTAGCATTTGTTAATGTTGTTGATGATTCCAAAACCATTCATCGTGATTCTTGGCATAGGTTTTCTACTAAGAAGCAATCACATGGTTGGTGTGATTTTACTCCTGCTTCTACTATTTTTGATCCCAAATTGGGTTATTTGTTTAACAATGATTCTGTTTTGATAACTGCTGATATTCTTATTCTTAACGAGTCTGTTAATTTCACTCGCGAGAATAATGAGTTGTTGTCATCGTCTTTGTCTTCTTCGACTTTATCTTCATCGGTTGTTGCTGGACCTGTTTCTGATGTTTTGAGTGGGAAGTTCACGTGGAAGGTTCATAATTTTAGTTTGTTTAAGGAGATGATTAGGACACAGAAGATAATGAGTCCCATTTTTCCTGCTGGGGAGTGTAATTTGAGGATTAGTGTTTATCAGAGTACGGTGAGTGGTGTTGAGTATCTTTCAATGTGTTTGGAAAGTAAGGATACTGATAAGAATGCAATGTTGTCTGATAGGAGTTGCTGGTGTTTGTTTAGAATGTCTGTTTTGAATCAGAAGCCTGGTTCAAATCACATGCATAGAGATTCTTATGGTCGCTTTGCTGCTGATAATAAAAGTGGTGATAATACTAGCTTGGGTTGGAATGATTACATGAAGATGTCTGACTTCGTTGGCACGGATTCGGGGTTTGTGGTGGATGACACTGCGGTTTTTAGTACCTCGTTTCATGTGATCAAGGAGTTCAGCAGCTTCTCCAAGAATGGGGCAGTCATTGGTGGGAGAAGTGGAGGCAGTGCGAGGAAATCCGATGGCCACATTGGAAAGTTCACTTGGAGAATTGAGAATTTCACAAGGTTGAAGGATTTATTGAAGAAGAGGAAAATTACAGGTCTTTGCATAAAGAGTAGGAGGTTTCAGATTGGTAATAGGGATTGTCGTCTTATTGTTTATCCTCGAGGACAGTCTCAGCCACCATGCCACCTTTCAGTGTTTCTTGAAGTTACAGACTCAAGAAATTCTTCAAGTGATTGGAGTTGTTTTGTTAGTCATCGGTTGTCAGTTGTGAACCAGAAGACGGAGGATAAATCTGTTACCAAGGAATCTCAGAACCGCTACTCTAAAGCTGCAAAGGATTGGGGTTGGCGTGAATTCGTGACCCTTACAAGTCTATTTGATCAGGATTCAGGTTTTCTTGTCCAAGACACTGTTATTTTCTCAGCCGAAGTTCTTATATTGAAAGAGACATCAATTATGCAGGATTTTACTGAGCACGATTCTGAGTCAAATAGCAGCAGTTCCCTTCTTGATAGTACTGGGAAAAGAAGTTCATTTACATGGAAAGTGGAGAATTTCCTTTCTTTTAAGGAAATAATGGAGACTCGGAAAATCTTCAGTAAATTCTTTCAGGCTGGTGGATGCGAACTTCGAATTGGTGTGTATGAGTCATTTGATACCATCTGTATTTATCTGGAGAGTGACCAGGCTGTGGGTAGTGATCCTGACAAGAACTTCTGGGTCAGATACAGAATGGCTGTTGTGAATCAAAAAAATCCAGCCAAGACTGTATGGAAAGAATCTTCTATCTGCACAAAAACTTGGAATAATTCTGTTCTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCAGATGCAGGGTTTCTTCTCCGTGACACTGTTGTTTTTGTGTGTGAAATATTGGATTGCTGCCCTTGGTTTGACTTTTCAGACTTAGAGGTTTTTGCTTCGGAGGATGATCAGGATGCATTGACAACTGATCCTGATGAACTGATAGACTCTGAAGGCAGTGAAGGGATAAGTGGAGACGAGGAAGATATTTTTAGAAATCTTCTCTCCAGAGCTGGATTTCATTTAACTTATGGAGATAATCCTTCGCAGCCACAGGTTACTTTAAGAGAGAAACTTTTAATGGATGCTGGTGCAATCGCTGGGTTTCTGACTGGACTTCGGGTTTATCTTGATGATCCTGCAAAAGTAAAGCGTTTGCTTCTACCCACAAAGCTCTCTGGTAGTTGTGATGGGAAGAAGGCCACCAAGGCTGACGAGTCTTCCCCAAGTTTGATGAATATGCTAATGGGAGTTAAAGTCCTACAGCAAGCAATCATTGATTTACTATTAGATATAATGGTTGAGTGCTGCCAGCCTTCTGAAGTGGGTCCTGTTTCTGATTCTGTTGAGGAATGCTCTAAGCCTTCTCCAGACAGCAGTGGAACTGCTAGTCCTCTTCATTGTGATAATGAAAATAGAGCAGTGGAATCTGCCCAAGTTCTTGTTCATGAGAGATTGGATTCTGTTGTCGAAGAAAGCTGTAGTACGTCTTCTGTACAAAGCTCTGATTTAAATGGGCATTGTATTCAGGAAAAAGCTCTTCCTGGACAGCCTATTTGTCCACCAGAAACGTGTGCTACTGTTTCAGAAAATACGTCATTTCGGTCAAAGACCAAGTGGCCAGATCAGTCTGAGGAGCTCTTAGGTTTGATTGTAAACTCACTAAGAGCTTTGGATGGGGCCGTTCCACAAGGTTGTCCAGAACCAAGACGACGACCTCAGTCTGCACAGAAAATTGCTCTTGTATTGGACAAAGCTCCTAAGCATTTGCAAGCAGACCTTGTTACTTTGGTTCCCAAGTTGGTTGAGCAGTCAGAACATCCACTGGCTGCATATGCACTTATTGAGCGCCTTCAACAGCCAGATGCAGAACCTGCTTTACGAATACCTGTTTTTGGGGCTCTTAGTCAATTGGAGTGTGGTAGTGAAGTGTGGGAGCGCATTCTGTTTCAGTCATTTGAGCTTTTGACGGATTCAAATGATGAACCCCTGGTTGCAACAATAGATTTTATATTCAAAGCAGCATCTCAATGTCAACACCTCCCTGAAGCAGTTAGGACCGTTCGTGTCAGGCTGAAAAGTTTAGGTCTTGATGTGTCGCCTTGTGTCCTTGACTTTTTGAGCAAGACTATAAATAGTTGGGGGGACGTTGCTGAAACCATACTGAGGGATATTGATTGTGATGAGGATTATGGTGAAAGTTGCACAGCTCTGCCATGTGGGATTTTCTTATTTGGTGAACATGGCGCTGCTGCTACTGGACTGCACATGATTGATGAGCAGGCTTTTCGTGCCAGTCGTCATTTTTCTGATATTTACATACTGTTAGAAATGTTATCTATACCCTGTCTTGCTGTTGAAGCTTCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGCAATAGGTGCTCAGTCTGTAGCCCTGGTATTGGAAAGTCTTTTTTCCCAAAGATTGAACAATAATGCCAGAACTGAAAATTTTCAACATCCAGATGGTGCCACAGAGGAAGATGCCTGTGAGCAATTTGGAGTTCAAAGGGATGATTTTACATCTGTTCTTGGTCTTGCTGAAACTTTGGCCCTCTCCAGGGACCTATGTGTGAAAGAATTTGTGAAATTGCTGTATATGATAATCTTTAGATGGTATGCTAATGAATCTTATCGGGGGAGGATGCTGAAGAGGCTCGTTGACCGTGCTACCAGTACTACTGATAATGGCCGCGAAGTAGATTTTGATTTGGATATCTTGGTTACTTTGGTCTGTGAGGAACAAGAGTATATTAGGCCTGTCTTGAGTATGATGCGTGGAGTTGCAGAACTTGCAAATGTTGATCGTGCTGCATTGTGGCACCAGTTGTGTGCTAGTGAAGATGAAATTATTCACATTCGTGAAGAAAACAAAACTGATATTTCTAATATGGCTAGTGAAAAAGCTGTTCTTTCACAAAAGCTGAGTGAATCTGAGGCCACAAATAATCGTCTCAAGTCCGAAATGAAGGCTGAGGTAGATCAGTTTTCTCGGGAAAAGAAGGAACTAGCAGAACACATTCAAGAAATTGAGAGTCAACTTGAATGGCATCGCTCAGAGCGGGATGATGAAATACTAAAGCTCTCTTCAGAGAAGAAAGTTCTTCATGATCGTTTGCATGATGCAGAGGCACAACTTTCTCAGTTGAAGTCTCGGAAACGTGATGAACTGAAGAAAGTAGTCAAGGAGAAAAATGCACTCGCTGAAAGATTGAAGAATGCTGAAGCTGCACGCAAGAGATTTGATGAAGAATTGAAACGATTTGCAACAGAAAACGTGACTCGGGAAGAAATCCGGCAATCACTTGAGGATGAAGTTCGTAGATTGACTCAAACAGTTGGACAAACCGAGGGAGAAAAGCGGGAAAAGGAAGAGCAGGTTGCTAGGTGCGAAGCATATATTGATGGAATGGAATCAAAGTTGCAGGCCTGCCAGCAATATATTCACACCCTTGAGGCCTCGCTCCAGGAGGAAATGTCACGACATGCCCCATTATATGGTGCTGGTCTGGAGGCTCTATCAATGAAAGAGTTGGAAACAATATCTCGTATTCATGAAGAGGGCCTAAGGCAGATCCATGCCCTTCAACAACGAAAAGGGAGTCCAGCAGGGAGTCCTCTCTTGAGTCCTCATGCTCTCCCTCACAGCCATGGATTATATCCTGCAGGGTCTGTGGGACTCCCTCCCTCGGTCATCCCAAATGGCGTAGGGATCCATAGCAACGGACATGTGAATGGTGCAGTAGGACCCTGGTTTAACCACCCTTGA 5034 0.4267 MKCSSEAVSSLSLSSVPSSSFTDQSQPATSSSSSSSAAAAEDLAIGSRDGGSALETVVVDRRNEYSAVCKWTVNNFPKVKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISVYLKIMDPRGTSSSKWDCFASYRLAFVNVVDDSKTIHRDSWHRFSTKKQSHGWCDFTPASTIFDPKLGYLFNNDSVLITADILILNESVNFTRENNELLSSSLSSSTLSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIRTQKIMSPIFPAGECNLRISVYQSTVSGVEYLSMCLESKDTDKNAMLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGTDSGFVVDDTAVFSTSFHVIKEFSSFSKNGAVIGGRSGGSARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNSSSDWSCFVSHRLSVVNQKTEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTEHDSESNSSSSLLDSTGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLLRDTVVFVCEILDCCPWFDFSDLEVFASEDDQDALTTDPDELIDSEGSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKATKADESSPSLMNMLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVSDSVEECSKPSPDSSGTASPLHCDNENRAVESAQVLVHERLDSVVEESCSTSSVQSSDLNGHCIQEKALPGQPICPPETCATVSENTSFRSKTKWPDQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVTLVPKLVEQSEHPLAAYALIERLQQPDAEPALRIPVFGALSQLECGSEVWERILFQSFELLTDSNDEPLVATIDFIFKAASQCQHLPEAVRTVRVRLKSLGLDVSPCVLDFLSKTINSWGDVAETILRDIDCDEDYGESCTALPCGIFLFGEHGAAATGLHMIDEQAFRASRHFSDIYILLEMLSIPCLAVEASQTFERAVARGAIGAQSVALVLESLFSQRLNNNARTENFQHPDGATEEDACEQFGVQRDDFTSVLGLAETLALSRDLCVKEFVKLLYMIIFRWYANESYRGRMLKRLVDRATSTTDNGREVDFDLDILVTLVCEEQEYIRPVLSMMRGVAELANVDRAALWHQLCASEDEIIHIREENKTDISNMASEKAVLSQKLSESEATNNRLKSEMKAEVDQFSREKKELAEHIQEIESQLEWHRSERDDEILKLSSEKKVLHDRLHDAEAQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETISRIHEEGLRQIHALQQRKGSPAGSPLLSPHALPHSHGLYPAGSVGLPPSVIPNGVGIHSNGHVNGAVGPWFNHP* 1678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3893 1677 ProSiteProfiles MATH/TRAF domain profile. 572 696 IPR002083 GO:0005515
Mtr3g3893 1677 Coils Coil 1447 1513 - -
Mtr3g3893 1677 SUPERFAMILY TRAF domain-like 405 546 - -
Mtr3g3893 1677 MobiDBLite consensus disorder prediction 1 37 - -
Mtr3g3893 1677 CDD MATH 574 696 IPR002083 GO:0005515
Mtr3g3893 1677 SMART math_3 68 176 IPR002083 GO:0005515
Mtr3g3893 1677 SMART math_3 241 354 IPR002083 GO:0005515
Mtr3g3893 1677 SMART math_3 409 521 IPR002083 GO:0005515
Mtr3g3893 1677 SMART math_3 577 677 IPR002083 GO:0005515
Mtr3g3893 1677 ProSiteProfiles MATH/TRAF domain profile. 66 196 IPR002083 GO:0005515
Mtr3g3893 1677 MobiDBLite consensus disorder prediction 865 880 - -
Mtr3g3893 1677 PANTHER TRAF-LIKE FAMILY PROTEIN 35 1676 - -
Mtr3g3893 1677 Pfam MATH domain 585 680 IPR002083 GO:0005515
Mtr3g3893 1677 Pfam MATH domain 436 542 IPR002083 GO:0005515
Mtr3g3893 1677 Pfam MATH domain 74 198 IPR002083 GO:0005515
Mtr3g3893 1677 SUPERFAMILY TRAF domain-like 65 204 - -
Mtr3g3893 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 232 379 IPR008974 GO:0005515
Mtr3g3893 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 396 549 IPR008974 GO:0005515
Mtr3g3893 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 557 698 IPR008974 GO:0005515
Mtr3g3893 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 53 203 IPR008974 GO:0005515
Mtr3g3893 1677 Gene3D - 1438 1630 - -
Mtr3g3893 1677 ProSiteProfiles MATH/TRAF domain profile. 404 540 IPR002083 GO:0005515
Mtr3g3893 1677 SUPERFAMILY TRAF domain-like 234 379 - -
Mtr3g3893 1677 ProSiteProfiles MATH/TRAF domain profile. 236 373 IPR002083 GO:0005515
Mtr3g3893 1677 PANTHER TRAF-LIKE FAMILY PROTEIN 35 1676 - -
Mtr3g3893 1677 MobiDBLite consensus disorder prediction 856 881 - -
Mtr3g3893 1677 SUPERFAMILY TRAF domain-like 573 697 - -
Mtr3g3893 1677 Coils Coil 1521 1548 - -
Mtr3g3893 1677 CDD MATH 405 540 IPR002083 GO:0005515
Mtr3g3893 1677 CDD MATH 237 369 IPR002083 GO:0005515
Mtr3g3893 1677 Coils Coil 1390 1442 - -
Mtr3g3893 1677 CDD MATH 71 196 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3893 Mtr-Chr3 52757445 52768558 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3893 - - ccaj:109798115 2950.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3893 3 52757445 52768558 Mtr3g3893 3 52757445 52768558 ECH