Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3886 ATGGGTACCCTTACCCTGTCTCTTCTGAAACACTACACGCCATTTTCCACCACACTCTTCACCCACTCATCTCGAACGCTTTCCCCCGGTCACCTTTCCGCCGTATTCCGAAGAAAGAATCTTCCTTCCTTCCGCGCCATCTCATCTTCCTCTCAGCCGTTAACTGCGGAGAAAAATTCCCACGACGGTGGTGAAAATTCCCGCTCAAAGAGTCCTTCGCCGGAAGTATGGCTCCACAACACAATGAGTAAAAAGAAAGAGCTTTTTAAACCCAAAGTGGAAAAGAAAGTTGGAATGTATGTTTGTGGTGTTACTGCTTATGATCTTAGCCATATTGGTCATGCTCGTGTTTACGTCAATTTCGATCTTCTTTACAGATATTTTAAGCACTTGGGATTTCAAGTTTGTTATGTTCGCAATTTTACTGATGTAGATGACAAGATAATTGCTAGATCGAAGGAGTTAGGAGAAGATCCAATCAGTTTGAGTCGACGCTATTGTGAAGAGTTCTGTCAAGACATGGTAACTCTTAATTGTTTGCCTGCTACCGTGGAACCGAAAGTGTCTGAGCACATGCCCCAAATCATTGAAATGATTGAGAAGATTCTTAATAATGGGTATGCATACGATGTTGATGGGGATATATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAATTATCAAGTCGAGGTCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTACAAAACCAGGGGAGCCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCAGCTTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGGATTGACCTTGTATTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCTTGTAGTAAAAGTGATATTAGTGTTTGGATGCACAATGGTTTTGTCACCATTGACTCGGTGAAGATGTCTAAATCTCTGGGAAACTTTTTCACAATACGGCAGGTTGTAGATGTTTACCATCCGTTGGCTTTGAGATATTTTTTGATGAGTGCTCATTATAGATCTCCCATGAACTACTCTAATATACACCTTGAAAGTGCTTCAGACCGTGTTTTTTATATATACGAGACATTACACGAATGTGAAAGCTTTCTGAAGCAGCATGATCAGACAGTTAGGAAGGATTCCGTCCCACCAGATACGTTGAGTATTATCGGTAACTTCTATGATGTTTTTCGGACCTCAATGTCTGATGATCTTCACACTCCAGTTGCATTGGCCGGAATGTCTGACCCACTAAAATTAATTAACGACTTGCTGCATACTCGCAAGGGAAAAAAACAGCAATTTCGAATAGAATCACTTGCAGCTTTGAAGAAAAGCATTGGGGATGTCCTTACTGTTTTAGGTCTCATGCCTTCAAGTTATTATGAGGTTTTACAGCAGCTTAAGGAGAAAGCTCTTAATCGTGCAAACCTGACAGAAGATGAAATCTTGAAGAAGATCGAAGAACGGGATGCTGCTAGAATACAAAAGGAGTATGCCAAATCCGATTCCATAAGGAAAGGTTTGGCTGTTCTTGGTATTGCTCTTATGGATAGTCCGAATGGCACAACTTGGAGGCCTACCATTCCTCTTCCGCTTCAAGAACAACTCTAG 1713 0.4174 MGTLTLSLLKHYTPFSTTLFTHSSRTLSPGHLSAVFRRKNLPSFRAISSSSQPLTAEKNSHDGGENSRSKSPSPEVWLHNTMSKKKELFKPKVEKKVGMYVCGVTAYDLSHIGHARVYVNFDLLYRYFKHLGFQVCYVRNFTDVDDKIIARSKELGEDPISLSRRYCEEFCQDMVTLNCLPATVEPKVSEHMPQIIEMIEKILNNGYAYDVDGDIYFNVEKFPEYGKLSSRGLEDNRAGERVAVDSRKKNPADFALWKSTKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACSKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVVDVYHPLALRYFLMSAHYRSPMNYSNIHLESASDRVFYIYETLHECESFLKQHDQTVRKDSVPPDTLSIIGNFYDVFRTSMSDDLHTPVALAGMSDPLKLINDLLHTRKGKKQQFRIESLAALKKSIGDVLTVLGLMPSSYYEVLQQLKEKALNRANLTEDEILKKIEERDAARIQKEYAKSDSIRKGLAVLGIALMDSPNGTTWRPTIPLPLQEQL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3886 570 MobiDBLite consensus disorder prediction 48 76 - -
Mtr3g3886 570 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 416 560 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mtr3g3886 570 TIGRFAM cysS: cysteine--tRNA ligase 78 559 IPR015803 GO:0004817|GO:0005524|GO:0006423
Mtr3g3886 570 PRINTS Cysteinyl-tRNA synthetase signature 99 110 IPR024909 -
Mtr3g3886 570 PRINTS Cysteinyl-tRNA synthetase signature 135 144 IPR024909 -
Mtr3g3886 570 PRINTS Cysteinyl-tRNA synthetase signature 264 282 IPR024909 -
Mtr3g3886 570 PRINTS Cysteinyl-tRNA synthetase signature 295 316 IPR024909 -
Mtr3g3886 570 Hamap Cysteine--tRNA ligase [cysS]. 76 561 IPR015803 GO:0004817|GO:0005524|GO:0006423
Mtr3g3886 570 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 75 568 - -
Mtr3g3886 570 PANTHER CYSTEINYL-TRNA SYNTHETASE 75 568 IPR024909 -
Mtr3g3886 570 CDD CysRS_core 77 378 IPR032678 -
Mtr3g3886 570 Pfam tRNA synthetases class I (C) catalytic domain 89 385 IPR032678 -
Mtr3g3886 570 Gene3D HUPs 59 378 IPR014729 -
Mtr3g3886 570 SUPERFAMILY Nucleotidylyl transferase 76 383 - -
Mtr3g3886 570 Coils Coil 495 515 - -
Mtr3g3886 570 Gene3D - 379 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3886 Mtr-Chr3 52702619 52708689 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3886 K01883 - gmx:100786700 974.156