Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3866 ATGACGGATTTACCGAAGGATTTACAGAAAGGTGATTCGATTCAAATCAGAGAGGTATGGAACGATAATCTGGAAGAGGAGTTTGTGTTGATTCGTGAAATTGTTGATAAGTATAACTATGTTGCGATGGATACGGAGTTTCCTGGTGTTGTTCTTCGGCCTGTTGGGAATTTTAAGCATATTAATGATTTTAACTATCAGACTTTGAAGGATAACGTTGATATGTTGAAGCTGATTCAGTTAGGTTTAACTTTTTCTGATGAGAATGGAAATTTACCTACTTGTGGCACTGATAGTCCTTGCATCTGGCAATTCAATTTTCGCGAGTTTAATGTTAGCGAAGATATTTTCGCTGCTGATTCGATTGAGCTTTTGCGTCAATGCGGAATTGATTTTAAGAAGAACAGCGAGCAAGGAATTGATGTGAACCGATTTGGGGAACTTTTGATGTCATCGGGGATTGTGTTGAATGATAATGTTCATTGGGTTACTTTTCACAGTGGTTATGATTTTGGTTATCTTTTGAAGCTTTTGACGTGCAGGGCTTTGCCGGATACACAAGCTGGATTCTTCGATTTGATCGGGATTTATTTCCCGATTGTGTATGATATCAAGCATTTGATGAAGTTCTGCAACAGTCTTCATGGTGGTTTGAACAAGCTTGCGGAATTGTTGGACGTTGAGAGGGTTGGTGTGTGCCATCAAGCTGGATCGGATAGTTTACTCACAGCTTGTACATTTAGGAAGTTGAGGGAAACATTCTTCAACGGCGAAACAGAGAAATATTCTGGTGTGTTGTATGGATTAGGTGTTGAGAAAACAGACTAA 828 0.3925 MTDLPKDLQKGDSIQIREVWNDNLEEEFVLIREIVDKYNYVAMDTEFPGVVLRPVGNFKHINDFNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSPCIWQFNFREFNVSEDIFAADSIELLRQCGIDFKKNSEQGIDVNRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCRALPDTQAGFFDLIGIYFPIVYDIKHLMKFCNSLHGGLNKLAELLDVERVGVCHQAGSDSLLTACTFRKLRETFFNGETEKYSGVLYGLGVEKTD* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3866 275 SUPERFAMILY Ribonuclease H-like 16 269 IPR012337 -
Mtr3g3866 275 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 8 274 IPR039637 GO:0004535|GO:0030014
Mtr3g3866 275 Pfam CAF1 family ribonuclease 19 140 IPR006941 -
Mtr3g3866 275 Gene3D - 4 273 IPR036397 GO:0003676
Mtr3g3866 275 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED 8 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3866 Mtr-Chr3 52475674 52477330 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3866 K12581 - gmx:100785970 513.457