Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3865 ATGGCAACTAGAAGAACTACAAAACTAATCAAATCAGTTTTCGCCGCCGTAACTGCTTCCAGAACCAGAACCCCTCTCACTCGTTCTCTCTCCGCCCCACTCTTCAATGGAAGCTTCCTTCACCCTTCACAAAACGCGAGAAAACATCTTTCACGCTCTCAGATTATCGACCCAACCACCAATGTCGCCTCCGCGAAGTTCCTCTCTCACTCTTTTACTCGCAATTTCCACGCCTCTGCTCCTTCTTACCGCTCCGCCGGAGCTTCTCAGATATCACAGACGGAGTTCACAGAAATGGCTTGGGAGGGTGTTATTGGTGCCGTTGATGCTGCACGAGTCAATAAACAACAAATTGTGGAGTCCGAGCATTTAATGAAAGCTCTCCTGGAGCAAAGGGATGGTTTGGCTCGAAGGATATTTACGAAGGCAGGATTGGACAATACGTCAGTTCTACAAGCTACTGATAACTTTATAGCTCAGCAACCTAAGGTTACAGGTGACACTTCTGGTCCTGTAATTGGCTCGCATTTTAGCTCGATCTTGGACAACTCTCATAGACACAAGAAAGAAATGGGTGATGAGTACGTGTCTGTGGAACACCTTTTGCTAGCATTTCACTCAGATAAGAGGTTTGGGCAACAGTTATTTAAGAATCTTCAGCTTAGCGAGAAGACTTTGAAGGATGCTGTACAGGCTATTCGTGGAAGTCAAAGAGTAACCGATCAAAATCCTGAGGGGAAATATGAAGCATTGGAAAAGTACGGAAACGACCTGACGGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATAGGCCGAGATGATGAGATTCGGCGCTGTATCCAGATATTATCAAGAAGAACGAAGAATAATCCAGTTATTATTGGTGAACCTGGTGTGGGGAAAACTGCAATTGCTGAAGGATTAGCACAACGTATAGTGCGTGGAGATGTTCCAGAGCCATTGATGAACAGGAAGTTGATCTCCCTTGATATGGGTTCATTGCTTGCCGGTGCCAAGTTTCGGGGAGATTTCGAAGAAAGGTTGAAAGCTGTCCTGAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATACACACTGTTGTAGGGGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGAAGAGGCGAACTTCGATGTATAGGAGCAACTACATTGAATGAATATAGAAAATACATTGAGAAGGATCCTGCACTTGAACGTAGATTTCAACAAGTATTTTGCTGTCAACCATCTGTTGAAGATACAATATCTATTCTCCGCGGGTTGCGTGAGCGCTATGAATTACATCACGGAGTCAAAATATCAGATAGTGCACTTGTTTCAGCTGCAGTTCTTGCAGATCGATACATCACAGAACGCTTCCTACCAGACAAAGCTATCGATCTTGTCGATGAAGCTGCTGCAAAGCTGAAGATGGAGATCACCTCTAAACCAACAGAATTGGATGAGATAGATAGAGCTGTCTTGAAGCTGGAGATGGAAAAACTCTCTTTGAAAAGTGACACCGACAAGGCATCTAAAGAAAGACTAAGTAAGCTTGAAAATGATCTGAGTTTACTTAAACAGAAGCAAAAAGAATTGGCAGAACAATGGGACAGCGAAAAAGTTTTGATGACTCGAATAAGATCAGTCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAGCGTGATTATGACCTGAACCGTGCTGCTGAGCTTAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTGGAAGAAGCTGAAAAAAATCTAGCTGAGTTCCAAAACTCTGGACAATCTTTTCTTCGTGAAGAGGTCACCGACCTTGATATTACAGAGATTGTAAGCAAATGGACTGGTATACCACTATCAAACCTCCAACAAACTGAGAGAGAAAAGTTAGTTTTTCTAGAACAGGTTCTTCATAAAAGGGTGATTGGTCAGGATATTGCTGTAAAATCTGTGGCCGATGCAATTCGCCGTTCGAGGGCTGGATTGTCCGACCCAAACAGGCCAATTGCAAGTTTTATGTTCATGGGCCCAACTGGTGTTGGAAAAACCGAGCTTGGCAAAGCTTTGGCCAATTACTTGTTTAACACAGAAAATGCTCTTGTTAGAATCGATATGAGTGAGTATATGGAGAAACATGCTGTTTCACGTTTAGTTGGGGCACCTCCTGGTTATGTTGGTTATGAAGAAGGTGGACAGCTAACTGAAGTGGTCCGCAGAAGACCCTACTCTGTGGTACTATTTGATGAAATAGAGAAAGCACATCACGACGTCTTTAATATCTTGTTACAATTGTTGGATGACGGACGGATTACTGATTCTCAAGGAAGGACTGTTAGCTTCACAAATTGTGTTTTGATTATGACTTCAAACATTGGCTCCCATCACATACTTGAAACCCTAAGTAGTACACAAGATGACAAAATTGCAGTTTATGATCAGATGAAAAGGCAAGTTGTTGAGTTGGCCAGGCAAACATTTCGTCCAGAGTTCATGAATCGCATTGACGAGTATATAGTTTTCCAGCCTTTGGATTCCAGTGAGATAAGCAAAATAGTGGAGCTTCAGATGGAAAGAGTGAAGGGCAGGCTCAAACAGAAGAAAATTGATCTTCATTATACTGAAGAAGCTGTTAAACTTCTTGGTGTGTTGGGTTTTGATCCTAACTTTGGGGCAAGACCAGTTAAAAGAGTAATACAACAATTGGTTGAGAATGAAATTGCAATGGGAGTTCTAAGGGGAGATTTCAAAGAAGAGGATTCAATTATTGTTGATGCTGATGATACTCCATCAGGCAAGGAACGTCCCCCCTTAAATAAATTGATTATTAAGAAGCAGGAGAGCCTTGTTGCGGATGCCATGGTTGCCAATGACTAA 2943 0.4271 MATRRTTKLIKSVFAAVTASRTRTPLTRSLSAPLFNGSFLHPSQNARKHLSRSQIIDPTTNVASAKFLSHSFTRNFHASAPSYRSAGASQISQTEFTEMAWEGVIGAVDAARVNKQQIVESEHLMKALLEQRDGLARRIFTKAGLDNTSVLQATDNFIAQQPKVTGDTSGPVIGSHFSSILDNSHRHKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSEKTLKDAVQAIRGSQRVTDQNPEGKYEALEKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCCQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKSDTDKASKERLSKLENDLSLLKQKQKELAEQWDSEKVLMTRIRSVKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLAEFQNSGQSFLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVFLEQVLHKRVIGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELGKALANYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVLIMTSNIGSHHILETLSSTQDDKIAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSSEISKIVELQMERVKGRLKQKKIDLHYTEEAVKLLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIIVDADDTPSGKERPPLNKLIIKKQESLVADAMVAND* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3865 980 SUPERFAMILY Double Clp-N motif 95 246 IPR036628 -
Mtr3g3865 980 SMART AAA_5 288 433 IPR003593 -
Mtr3g3865 980 SMART AAA_5 691 848 IPR003593 -
Mtr3g3865 980 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 695 713 IPR001270 GO:0005524
Mtr3g3865 980 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 740 758 IPR001270 GO:0005524
Mtr3g3865 980 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 769 787 IPR001270 GO:0005524
Mtr3g3865 980 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 802 816 IPR001270 GO:0005524
Mtr3g3865 980 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 96 950 IPR017730 GO:0005737|GO:0009408|GO:0042026
Mtr3g3865 980 Gene3D - 866 955 - -
Mtr3g3865 980 CDD AAA 665 820 - -
Mtr3g3865 980 Gene3D - 92 238 IPR036628 -
Mtr3g3865 980 CDD AAA 271 431 - -
Mtr3g3865 980 Pfam Clp amino terminal domain, pathogenicity island component 107 158 IPR004176 -
Mtr3g3865 980 Pfam Clp amino terminal domain, pathogenicity island component 185 235 IPR004176 -
Mtr3g3865 980 ProSiteProfiles Clp repeat (R) domain profile. 91 236 IPR004176 -
Mtr3g3865 980 Coils Coil 562 582 - -
Mtr3g3865 980 Pfam AAA lid domain 432 534 IPR041546 -
Mtr3g3865 980 Pfam C-terminal, D2-small domain, of ClpB protein 866 946 IPR019489 -
Mtr3g3865 980 Gene3D - 643 864 IPR027417 -
Mtr3g3865 980 Gene3D - 433 638 IPR027417 -
Mtr3g3865 980 Coils Coil 589 623 - -
Mtr3g3865 980 Pfam ATPase family associated with various cellular activities (AAA) 294 427 IPR003959 GO:0005524|GO:0016887
Mtr3g3865 980 Gene3D - 239 432 IPR027417 -
Mtr3g3865 980 PANTHER ATP-DEPENDENT CLP PROTEASE 69 976 - -
Mtr3g3865 980 Coils Coil 524 551 - -
Mtr3g3865 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 639 IPR027417 -
Mtr3g3865 980 PANTHER BNAC09G42450D PROTEIN 69 976 - -
Mtr3g3865 980 Pfam AAA domain (Cdc48 subfamily) 690 859 IPR003959 GO:0005524|GO:0016887
Mtr3g3865 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 950 IPR027417 -
Mtr3g3865 980 ProSitePatterns Chaperonins clpA/B signature 1. 384 396 IPR018368 GO:0005524
Mtr3g3865 980 SMART ClpB_D2_small_2 866 960 IPR019489 -
Mtr3g3865 980 ProSitePatterns Chaperonins clpA/B signature 2. 725 743 IPR028299 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3865 Mtr-Chr3 52460054 52468486 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3865 K03695 - gmx:100782242 1707.96