Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3856 ATGGAACACATAGGTTCAAGCAAAGATGCTAACAACACCAACTACACAGAAATGGACATTGACCTTGACGACGATGAAGATCAATCCAACGCCGAAATCCTCAACGAACTCGGCGACGATATGGTCAAATACTTTTGCAAGAAAGCTTCCGTTATGTTCTTCGACCAATACGGTTTAATCAGTCACCAAATCAACTCGTACAATCAATTCATCAATTCGGGTCTTCAAAGCGCTTTCGATTCCTTCGGTGATCTCACTGTTACGCCTGGTTTTGATCCTTCTAAGAAAGGTGCTGATGAACATTACCGTTATGCTACGGTTAAGTTTGGGAAGGTTACGCTTGAGCGACCTAAGTTTTGGTGTGGTGAAGGGAATGCTCAAGAGTTGAAGATGCTTCCCAGACATGCCAGGTTGCAGAGGATGACTTATGCTTCTAAGATGAAAGTTGATGTTCACATCCAGGTATATGTTATGAAGAAGGTTCGGAGTGATAAGTTTAAGACTGGGAAAGAAGAATACATTGATAAAGATATTAAATGGGAGGATACGAGGGAAATAACTATTGGGAGACTGCCTGTTATGGTCAAGTCTGATCTGTGTTGGATGAGTGAAGCTGAGAAAGGTGATTGTGAATTTGACCACGGAGGCTACTTTCTGATTAAGGGTGCTGAAAAGATTTTTATCGCACAAGAGCAAATATTTCTGAAGAGGCTCTGGGTTTCAAATATTCCATACTGGGCTGTTGCTTTCAAGTCGCAGATGAAGAGAAATAGGATGGTTGTTAAATTGGTGGAAGGTTCGACGGAGGGAATTACAAACGGAGAGAAGCTGCTCACAGTGTATTTTCTGTCTGTAGAGATACCTGTATGGATATTGTTTTTTGCTCTTGGTGTCACATCAGATAAAGAAATTGTTGATCTCATCGATTATGGAGAGGCAAATGGAAGAATTGAAAACATTCTCTTTGCATCCATCCGTGAGGCAGACGATAAATGTGAAGCATTTCGTAGGGGAAAGAACGCTCTTCTTTTCTTAGAGGAACGTGTAAAAGGTGTACAATTTCCACCCGCAGAATCTATTGACGAGTGCTTTAACATGTATGTTTTTCCGAACGTTAAAGGATTAAAAAGAAAGGCAAGGTATCTAGCTTACATGGTGAAGGTTCTTCTACTAGCATATACTGGCCGCCGAAAAACTGATAACAGGGACGATTTTCGAAACAAGAGGCTTGAGTTGGCTGGTGAGCTGCTGGAGCGTGAGATTAAAGTGCACTTTGCACATGCTAGGAAGCGAATGGGGAAGGCTCTGCAGAGAGACCTTTATGGAGAACGAGAAGTTCGTCAAATTGAGCACTATCTTGACGCTTCCATTATTACAAATGGTCTCCAAAGAGCGTTTTCTACTGGAGCTTGGACACATCCTTTCAAAAGGATGGAAAGGATTTCTGGTGTGGTTGCAACTCTTGGGCGAACCAATCCATTACAAACCATGGCTGAATTAAGAAGAACAAGGCAACAAGTTCAGTACACAGGAAAGGTCGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGTAAGGTTTGTTTTCTTTCCACCCCAGATGGTGAAAATTGTGGACTTGTAAAAAATTTGGCTGTCACAGGAGTAGTAAGTACCGATGTAACTGAATCCATACTTCCTCAGCTGTCCGATTGTGGGATGGAAGAACTTGTTGATGATACTACAACTGTTCTGGGGAAAAAAGACAAAGTCTTCCTAAATGGGGACTGGGTTGGAGTTTGTTCAGATTCCATATCATTTGTGGCAGAGCTACGAACTAGAAGACGGAGGAATGAGTTGCCTCATCAGGTGGAAATCAAAAGAGATCAGTGTCAACAAGAAGTGCGCATATTATCTGATGCAGGAAGGATTCTCCGTCCACTCTTGGTTGTTAGTAATCTGCTCAAGATTAAAGGATCTAAGTCTGAGCATAAATCTTTCCAGTCCCTATTGGATAATGGCGTGATTGAGCTGATTGGTCCTGAAGAAGAAGAGGACTTCAAGACTGCTTGGGGTGTTCAGTATTTGTTTGGCAAAGAGGGAAAATCTTCTGTGAAGTACACACATTGTGAACTTGATATGTCATTCTTATTAGGTCTAAGCTGCTCACTTGTTCCATTTGCAAATCATGACCATGCTAGGAGAGTGTTGTACCAATCCCAGAAGCATTCTTCTCAGGCTATTGGCTTTGCTACGACAAACCCAAATATAAGAGTCGATGCTTTGTCTCACCAACTGTTTTATCCACAGAGACCACTCTTTCAGACAATGACATCTGATTGTCTTGGAAAACCTGGATATCTTGGTCAGAGTAAAGTTGTTCCAAAGTCTGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTGCATCTCGGATATAATCAAGAAGATTCGTTGGTTATGAACCGTGCTTCGTTGCAGCGCGGCATGTTCAGATCTGAGCATATAAGGAGTTACAAAGCTGAAATTGAGAATAAGGAATCTTCAGAAAAGAGAAAGAAACCTGAAGACATTGTTAATTTTGGAAAGATACAGAGTAAAATTGGCCGAGTTGATAGCCTTGATGATGATGGCTTTCCATTTGTTGGAGCAAATTTGCAAAGTGGTGATATTATCATCGGGCGGTGTGCTGATTCCGGGACGGACCATAGTATAAAGCTAAAGCACACCGAAAGGGGTTATGTTCAGAAGGTTGTGCTGTCTTCGAATGATGAGGGGAAGAATTTTGCTGTTGTTTCGCTGAGACAGGTTAGGAGCCCAGTTCTTGGAGATAAGTTCTCCAGTATGCATGGACAGAAGGGTGTTTTGGGATTTCTGGAGTCTCAAGAAAATTTTCCCTTCACAAAACAAGGCATTGTTCCAGATATTGTTATAAATCCACATGCATTTCCCTCGCGACAAACTCCTGGACAACTACTAGAGGCTGCTTTGGGAAAGGGCATCGCTTGTGTTGGTTCACTGAGGAATGCTACTCCTTTCTCCACTTCCTCTGTTGAAGCCATTACTGACCAGCTTCATAGAGCTGGCTTTTCAAGATGGGGGAACGAACGAGTATACAACGGAAGGACCGGTGAGATGGTCCGATCGCTAATATTTATGGGCCCAACATTCTACCAGCGACTGCACCACATGTCCGAAGACAAAGTCAAATTCAGGAACACTGGCCCAGTTCACCCGCTGACCCGACAGCCTGTCGCTGACAGGAAGCGATTTGGAGGTATCAAGTTTGGTGAGATGGAGCGTGATTGCCTGATAGCTCATGGTGCTTCAGCAAATTTGTATGAACGCCTCTTCACCCTGAGTGATTCGTCTCAGATACACATTTGTAGTAAATGCAAGAATGTTGCAAATGTGATCTTGCGACCGGTATCTGGTGGCCGGAAGATTCGAGGTCCGTATTGCCGTTTCTGTGAATCAGCCGATGACATTGTGGTGGCCAGTGTTCCATATGGAGCAAAGTTATTGTCTCAGGAGCTGTTCAGCATGGGCATTAATCTCAAATTTGAAACTGAGCTTTGCTAG 3567 0.4312 MEHIGSSKDANNTNYTEMDIDLDDDEDQSNAEILNELGDDMVKYFCKKASVMFFDQYGLISHQINSYNQFINSGLQSAFDSFGDLTVTPGFDPSKKGADEHYRYATVKFGKVTLERPKFWCGEGNAQELKMLPRHARLQRMTYASKMKVDVHIQVYVMKKVRSDKFKTGKEEYIDKDIKWEDTREITIGRLPVMVKSDLCWMSEAEKGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVSNIPYWAVAFKSQMKRNRMVVKLVEGSTEGITNGEKLLTVYFLSVEIPVWILFFALGVTSDKEIVDLIDYGEANGRIENILFASIREADDKCEAFRRGKNALLFLEERVKGVQFPPAESIDECFNMYVFPNVKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLEREIKVHFAHARKRMGKALQRDLYGEREVRQIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGVVSTDVTESILPQLSDCGMEELVDDTTTVLGKKDKVFLNGDWVGVCSDSISFVAELRTRRRRNELPHQVEIKRDQCQQEVRILSDAGRILRPLLVVSNLLKIKGSKSEHKSFQSLLDNGVIELIGPEEEEDFKTAWGVQYLFGKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFATTNPNIRVDALSHQLFYPQRPLFQTMTSDCLGKPGYLGQSKVVPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFETELC* 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3856 1188 ProSitePatterns RNA polymerases beta chain signature. 938 950 IPR007121 GO:0003677|GO:0003899|GO:0006351
Mtr3g3856 1188 Pfam RNA polymerase beta subunit 58 446 IPR007644 GO:0003677|GO:0003899|GO:0006351
Mtr3g3856 1188 Gene3D - 716 1071 IPR037033 GO:0003677|GO:0003899|GO:0006351
Mtr3g3856 1188 Pfam RNA polymerase Rpb2, domain 2 270 411 IPR007642 GO:0003677|GO:0003899|GO:0006351
Mtr3g3856 1188 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 29 1185 IPR015712 GO:0003899|GO:0006351|GO:0032549
Mtr3g3856 1188 Pfam RNA polymerase Rpb2, domain 4 584 644 IPR007646 GO:0003677|GO:0003899|GO:0006351
Mtr3g3856 1188 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 29 1185 - -
Mtr3g3856 1188 Gene3D - 399 585 - -
Mtr3g3856 1188 Gene3D - 51 233 - -
Mtr3g3856 1188 Pfam RNA polymerase Rpb2, domain 5 660 706 IPR007647 GO:0006351
Mtr3g3856 1188 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 41 1186 - -
Mtr3g3856 1188 CDD RNA_pol_B_RPB2 59 1184 IPR015712 GO:0003899|GO:0006351|GO:0032549
Mtr3g3856 1188 Gene3D RNA polymerase Rpb2, domain 2 244 398 IPR037034 GO:0003677|GO:0003899|GO:0006351
Mtr3g3856 1188 Gene3D RNA polymerase alpha subunit dimerisation domain 1072 1186 - -
Mtr3g3856 1188 Pfam RNA polymerase Rpb2, domain 6 715 1085 IPR007120 GO:0003677|GO:0003899|GO:0006351
Mtr3g3856 1188 Pfam RNA polymerase Rpb2, domain 3 488 547 IPR007645 GO:0003677|GO:0003899|GO:0006351
Mtr3g3856 1188 Pfam RNA polymerase Rpb2, domain 7 1087 1185 IPR007641 GO:0003677|GO:0003899|GO:0006351
Mtr3g3856 1188 Gene3D - 746 934 IPR014724 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3856 Mtr-Chr3 52329554 52336971 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3856 - K16252 gmx:100815934 2013.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3856 3 52329554 52336971 Mtr3g3856 3 52329554 52336971 ECH