Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3854 ATGGCGTTTTTGAGATCTCTCGTTTTCTCTACTCTTCTTCTCTCTCTCCTTCATACCGCTTTCTCCTTCTACCTTCCCGGCGTTGCTCCACAAGACTTCTTTAAGGGAGATGTATTACAAGTGAAAGTAAACAAATTAACATCTACGAAGACCCAGCTTCCATACTCATTTTATTCACTTCCTTATCCTGCCCCCAAAAAGATACAGGATAGTGCAGAAAATCTTGGGGAAGTTCTTCGTGGTGACCGCATTGAAAATTCACTATATGTGTTTAAAATGCGCGAGCCACAAATGTGTAATGTTGTGGGTAAAATTAAACTTGATGCTAAAAATGCTAAGGAGTTCAAAGAGAAGATCAATGACGAGTATCGGGTGAACATGATTCTAGATAACCTTCCTCTAGTTGTTCCCATAAAACGGAATGATCAGGATTCTACCGTCTATCAGCTTGGTTTCCATGTTGGACTCAAAGGGCAGTATACCGGGAGCAAGGAGGAAAAGTATTTTATCCACAATCATTTGGCATTTACTGTCAAGTATCATAGAGATGTGCAAACTGAATCTGCTAGAATCGTGGGCTTTGAGGTTAAGCCATTCAGTGTTAAACATGAGTATGATGGTAAATGGGATGACAAAAAGACACGTTTGACAACCTGTGACCCTCATGCTAAGCACACAGTTGTGAACAACAACTCTCCTCAAGAAGTTGAAGAGAACAAGGAAATTATCTTCACATATGATGTTGATTTCCAGGAGAGTGATGTGAAGTGGGCCTCAAGATGGGATGCCTATTTGCTAATGAATGATGACCAAATTCACTGGTTCTCTATTGTAAACTCATTAATGATTGTTCTCTTTCTTTCGGGCATGGTGGCAATGATAATGCTGAGAACACTCTACCGTGACATTGCAAAGTATAACGAGCTTGAGACCCAGGAAGAAGCCCAAGAAGAGACTGGTTGGAAGCTTGTCCATGGGGATGTATTTAGGCCACCTAACAACTCAGATTTGCTGTGTGTTTATGTCGGAACAGGTGTTCAATTTTTTGGGATGATACTAGTAACCATGATATTTGCCATCCTTGGGTTCCTCTCTCCTTCAAACCGGGGTGGGCTCATGACAGCCATGCTCTTGGTTTGGGTTTTCATGGGAATATTTGCTGGTTATTCTTCAACTCGCTTGTACAAAATGTTCAAAGGATCAGAGTGGAAAAGAATTGCCCTCAGGACTGCAACCTTGTTCCCTGCAATTGTCTCTGTCATCTTCTTTATATTAAATGCTCTCATTTGGGGCCAAAAGTCATCTGGAGCTGTGCCATTTGGTACAATGTTTGCTCTGGTCTTTTTATGGTTTGGGATCTCTGTTCCACTTGTTTTTGTGGGTAGCTATATTGGTTTCAAAAAACCTGCAATTGAGAATCCTGTGAAAACAAACAAAATCCCAAGGCAGATCCCTGAGCAGGCCTGGTACATGAACCCAGCCTTCTCTGTTTTGATTGGGGGAATACTTCCATTTGGAGCTGTTTTCATTGAGCTTTTCTTTATCCTCACCTCAATCTGGTTGAATCAGTTTTACTACATCTTTGGGTTCCTCTTTTTGGTCTTCATCATCCTTGTTGTCACTTGTGCTGAAATAACCATTGTGCTCTGCTACTTCCAGTTGTGCAGTGAGGATTATTTGTGGTGGTGGCGTTCATACCTTACTTCTGGTTCTTCTGCACTGTACCTCTTTCTTTATGCAACATTCTACTTCTTTACCAAGCTTGAAATCACAAAGCTGGTGTCGGCTATATTTTACTTTGGATACATGCTTATAGCTTCTTATGCGTTTTTTGTGGTAACCGGTACTATTGGATTCTATGCATGCTTTTGGTTCACAAGGCTCATCTACTCCTCAGTCAAAATTGATTAG 1911 0.4113 MAFLRSLVFSTLLLSLLHTAFSFYLPGVAPQDFFKGDVLQVKVNKLTSTKTQLPYSFYSLPYPAPKKIQDSAENLGEVLRGDRIENSLYVFKMREPQMCNVVGKIKLDAKNAKEFKEKINDEYRVNMILDNLPLVVPIKRNDQDSTVYQLGFHVGLKGQYTGSKEEKYFIHNHLAFTVKYHRDVQTESARIVGFEVKPFSVKHEYDGKWDDKKTRLTTCDPHAKHTVVNNNSPQEVEENKEIIFTYDVDFQESDVKWASRWDAYLLMNDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIAKYNELETQEEAQEETGWKLVHGDVFRPPNNSDLLCVYVGTGVQFFGMILVTMIFAILGFLSPSNRGGLMTAMLLVWVFMGIFAGYSSTRLYKMFKGSEWKRIALRTATLFPAIVSVIFFILNALIWGQKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFKKPAIENPVKTNKIPRQIPEQAWYMNPAFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFIILVVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSAIFYFGYMLIASYAFFVVTGTIGFYACFWFTRLIYSSVKID* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3854 636 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 6 636 IPR004240 GO:0016021
Mtr3g3854 636 Pfam Endomembrane protein 70 54 592 IPR004240 GO:0016021
Mtr3g3854 636 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 6 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3854 Mtr-Chr3 52309874 52313701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3854 1 636 Miscellaneous Gene Families AT5G10840 82.535 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3854 K17086 - gmx:100804029 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3854 3 52309874 52313701 Mtr3g3854 3 52309874 52313701 ECH