Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3837 ATGAATGACCCATTGAATGCAGCAGCACAAATGGGAGATATAGACTTGCTATTCAAACTGATTCAAATCGATCCTTACATCTTAGAACGCTATAATTTAATACCATTTGTTGATACTCCTTTGCATATTGCTGCAGCTTCTGGACATACAAGTTTTGCCACTGAGATTATGAGACTAAAACCTTCATTTGCTTGGAAACTAAACGAGTATGGACTCAGTCCCATACATCTTGCTTTACAAAACAAATATCACAGAATGGTTTGTCGCTTTGTAGATATTAATAAAGACCTTGTCCGAGTCAAAGGGAGAGAGGGTCTAACTCCATTGCATATTGCTACTCAAACTGGAAACTTTGATCTTGTAGTAAAATTCCTGTTTGTTTGTCCAGGTTGTATTGAAGATGTTACAGTTCGAAGTGAGACTGCTCTGCATATTGCTGTGAAATATAAGCAGTTTCATGTTCTTGAGATCTTGCTTGGTTGGCTTCGAAGGACATGCCACAGACGTTCTCACCACAAGGAAAAACGGGTTCTGAATTGGGAGGATGAAGCAGGCAACACAATCCTGCACATGTCAGTTCTCAATAGCTTCCCACAGGCAGTTGGATTGTTGATAGATAGCAATATAGACATAAATGCCAAGAATTTAGATGAACAAACAGCATTGGACATAGTGGAGCAGATTCAGAGCCAAGTTTATAGTGCAGAAATGAAGGACATGTTGATCAAAGCAGGAGCTTTGCATGGTTTTTCACTTGCTCCTACTCCGCTTCACGAAGAGCTACAATCAAAAATCACATTTAACGAGAGAATAGCAATTTGTGTTACTCGTTTAAGAAGGAGAATTTCAAGTGACACAAGAAACGCTTTGTTAGTAGTTGCTATTCTTTTCGCAACAAGTGCATATGAAGCAACACTTAACCCTCCAGCTGGTGGGGGGAAATTAGTGATGATGAAAATGCATACATACTTCTTAGGGTTTTGGTCGCTTAATACATTTTCATTTTATGTTTCAATTTTGATGATGTGTTTATTAATGCCAAGAGGACGTATAAGTGTTATAGTGACATGTCCACTTGCTCTATTCTGTGGCTGTTATATGTTTTCCATGCTGGTTATAGCACCAAGCTATACATTTGGAATTGTCACTGTGGCTATCCCGTGCATACTTGTGGCAGTGTATTTTTGGGGAGCTATGATATACATTACATTAGCTCAAAAGGTACGAATGTATGGTCGTGAATGGGAAGATGTATCCAAGTTTTCAGAAGGAAACAAATGGTAA 1284 0.3871 MNDPLNAAAQMGDIDLLFKLIQIDPYILERYNLIPFVDTPLHIAAASGHTSFATEIMRLKPSFAWKLNEYGLSPIHLALQNKYHRMVCRFVDINKDLVRVKGREGLTPLHIATQTGNFDLVVKFLFVCPGCIEDVTVRSETALHIAVKYKQFHVLEILLGWLRRTCHRRSHHKEKRVLNWEDEAGNTILHMSVLNSFPQAVGLLIDSNIDINAKNLDEQTALDIVEQIQSQVYSAEMKDMLIKAGALHGFSLAPTPLHEELQSKITFNERIAICVTRLRRRISSDTRNALLVVAILFATSAYEATLNPPAGGGKLVMMKMHTYFLGFWSLNTFSFYVSILMMCLLMPRGRISVIVTCPLALFCGCYMFSMLVIAPSYTFGIVTVAIPCILVAVYFWGAMIYITLAQKVRMYGREWEDVSKFSEGNKW* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3837 427 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Mtr3g3837 427 ProSiteProfiles Ankyrin repeat profile. 104 126 IPR002110 GO:0005515
Mtr3g3837 427 SUPERFAMILY Ankyrin repeat 4 229 IPR036770 -
Mtr3g3837 427 PANTHER ANKYRIN REPEAT PROTEIN 312 392 - -
Mtr3g3837 427 PANTHER ANKYRIN REPEAT PROTEIN 10 311 - -
Mtr3g3837 427 Pfam Ankyrin repeats (3 copies) 109 215 IPR002110 GO:0005515
Mtr3g3837 427 Gene3D - 1 263 IPR036770 -
Mtr3g3837 427 SMART ANK_2a 36 65 IPR002110 GO:0005515
Mtr3g3837 427 SMART ANK_2a 70 99 IPR002110 GO:0005515
Mtr3g3837 427 SMART ANK_2a 138 168 IPR002110 GO:0005515
Mtr3g3837 427 SMART ANK_2a 184 213 IPR002110 GO:0005515
Mtr3g3837 427 SMART ANK_2a 104 134 IPR002110 GO:0005515
Mtr3g3837 427 PRINTS Ankyrin repeat signature 105 120 IPR002110 GO:0005515
Mtr3g3837 427 PRINTS Ankyrin repeat signature 200 214 IPR002110 GO:0005515
Mtr3g3837 427 PANTHER HOMEOBOX PROTEIN WARIAI 10 311 - -
Mtr3g3837 427 PANTHER HOMEOBOX PROTEIN WARIAI 312 392 - -
Mtr3g3837 427 Pfam Domain of unknown function 284 383 IPR026961 -
Mtr3g3837 427 ProSiteProfiles Ankyrin repeat region circular profile. 104 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3837 Mtr-Chr3 52181862 52183800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3837 1 311 Miscellaneous Gene Families AT4G10720 43.450 6.10e-83 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3837 - - gmx:100790227 583.948