Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3790 ATGCGAACGAAAAGTATGAGGAAGAAGAAGAAGGGTGATGATGCTTGTAAAGAAAATGAAGCAAAATCGTCGAAAGTGTTGAAAGGAGCAGAAAGATCAGCATATTTCGCAAGAAGAGAAGCAGCGAAAGTATTGAAAACTGTACTCGAAGGAGATGCTAAGCGCCGTGCACTTGCTTCTATCAAAACCCTTGTTTATCATCCTTCTGTTAGGAACAAGAAAGCCACTTTTGCTCTCATCTGTCAAACCCTCAAACATCTTCCTTTTATCAACGATGTTTTGCAAGCTGCTAAAATTCTTAATACTAAGTGGAAGAGGCAACAAGAATTGATTTATATCATTGTTTATGATATCCTTTTCGGTCAGGAAGTTCCACTGGTTGGTGATGCAGAGAAGTACCTCATGCGCCACAAGGAAGCCCTACATTTACATCTCAAAAAGATTTTGTTACAGAAAAATGTGAAGACTGTTAAAGAGTTGTTTGCTCTACATGAGGTTCCTGATGTTTCTGTACCTCGAAATGTTCGTGTGAATACACTTAAACTGGATGTTGATTCTGCCTTAGTTGAACTTCGGAAAAAATACTCGGTTCAAAAGGATGATTTACTGCATGACTTGCTGATACTCCCTCCAGGAACTGATTTACATGATCATCCTCTTGTAAAAAACGGAAGCATATTTCTGCAAGGTAAGGCGAGTTCAATGGTGGCACCGGCCCTTAGCCCTGAACCAGGATGGGAGGTTCTTGATGCATGCGCTGCACCCGGCAACAAAACTGTCCACCTTGCTGCCCTTATGAAGAGAAAGGGTAGGATTATAGCATGTGAGCTGAAAAAGGAAAGGATTAAGCGCTTGAATGACACTATAAAGCTATCTGGGGCTACCAACATACAGGTTCTCAATGAGGATTTCTTGAACATAAATTCCAAAGACCCTGCATATTCTAAGGTAAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGTACTGCTGCTTCTAGACTAGACCATTTGCTCCCATCTAAAGCAGCAGGTCAGAATGTGGATATGGAAAGATTGAACAAGCTTGCAGCTTTTCAGAGAAAAGCTCTTCAGCATGCCTTCCTTTTTCCAGCTCTGGAACGAGTTGTGTACAGTACATGTTCAATAAACCAAATCGAGAATGAAGATGTTGTGAAATCTGTTTTGCCAATAGCCGAGTCATATGGATTTCAACTTGTAAAACCCTTCCCTGGGTGGCCGTGTCGGGGTCTTCCGATATTTGAAGGCTCTGAAAACCTGGTTCGAACAGATCCTGCCAAGCACGGCGAGGGTTTCTTCATTGCATTGTTTGCCAAGAAAGATGATGTTAACCTGTCGGCGAGGTCAAATAAAAATGACAATAGGACGCTCCACAGTTCTACCAGAACTAGAAACGTGCGAAGGAAACAACCAATTCACACTAATATGTTCAAAATGTGGTTATCTGGTCAACTGTGCCGGCGTCACCGTCACATGCTAGACAATTCCTGCTGTGGTCGAAATTGA 1530 0.4222 MRTKSMRKKKKGDDACKENEAKSSKVLKGAERSAYFARREAAKVLKTVLEGDAKRRALASIKTLVYHPSVRNKKATFALICQTLKHLPFINDVLQAAKILNTKWKRQQELIYIIVYDILFGQEVPLVGDAEKYLMRHKEALHLHLKKILLQKNVKTVKELFALHEVPDVSVPRNVRVNTLKLDVDSALVELRKKYSVQKDDLLHDLLILPPGTDLHDHPLVKNGSIFLQGKASSMVAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRIIACELKKERIKRLNDTIKLSGATNIQVLNEDFLNINSKDPAYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAGQNVDMERLNKLAAFQRKALQHAFLFPALERVVYSTCSINQIENEDVVKSVLPIAESYGFQLVKPFPGWPCRGLPIFEGSENLVRTDPAKHGEGFFIALFAKKDDVNLSARSNKNDNRTLHSSTRTRNVRRKQPIHTNMFKMWLSGQLCRRHRHMLDNSCCGRN* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3790 509 MobiDBLite consensus disorder prediction 1 24 - -
Mtr3g3790 509 MobiDBLite consensus disorder prediction 8 24 - -
Mtr3g3790 509 Gene3D Vaccinia Virus protein VP39 229 455 IPR029063 -
Mtr3g3790 509 PANTHER BNAA09G04380D PROTEIN 11 465 - -
Mtr3g3790 509 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 163 448 IPR001678 GO:0008168
Mtr3g3790 509 CDD AdoMet_MTases 248 336 - -
Mtr3g3790 509 PRINTS RNA (C5-cytosine) methyltransferase signature 220 234 IPR023267 GO:0001510
Mtr3g3790 509 PRINTS RNA (C5-cytosine) methyltransferase signature 249 259 IPR023267 GO:0001510
Mtr3g3790 509 PRINTS RNA (C5-cytosine) methyltransferase signature 318 330 IPR023267 GO:0001510
Mtr3g3790 509 PRINTS RNA (C5-cytosine) methyltransferase signature 374 390 IPR023267 GO:0001510
Mtr3g3790 509 PRINTS RNA (C5-cytosine) methyltransferase signature 430 447 IPR023267 GO:0001510
Mtr3g3790 509 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 172 448 IPR029063 -
Mtr3g3790 509 Gene3D Sun protein; domain 3 164 228 - -
Mtr3g3790 509 Pfam 16S rRNA methyltransferase RsmB/F 239 445 IPR001678 GO:0008168
Mtr3g3790 509 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 11 465 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3790 Mtr-Chr3 51745451 51751014 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3790 K15264 - gmx:100775620 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3790 3 51745451 51751014 Mtr3g3790 3 51745451 51751014 ECH