Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3783 ATGACGGATCCGTACTATCCATACCCAACTCCCGCACCTTCTGACGGAGCAAGCTTTGCCAGAAGTAGTTATGCAGGTTACATTCCATCTGAGGCACCGTCATTGGCTTCTCCTCTTCCTAAATCCACTGATTTTCCGGGTTATGGATCAGATTACCTTAATAAAGATGTAAGTTTGTTTCGGATGGAACCATATGGTGTTGATGATACAAGGGGATCTAGAGTTCACTCCGAACATAACGCGACAAGTTATAATCCTCTTGAAGATGTAGATTTAAGTACGAAAAGAGATGCTCTGTTGGGCGTTAGTACGGGTGTTCCTGATCCAATTGCAAATAACGAAAGATCAATCTCTAAAAGCAATTACGATGCCCTCCCAGTTTCAGCTGCGGAATCAAACATTTTGTTTGTGGGTGGGCTTCCAAAAGACTGCACTAGAAGGGAAGTAGGGCATCTTTTCCGTCCCTTTATTGGCTATAAAGATATCAAGGTTGTTCACAAGGAGCCACGACGAAGTGGGGACAAGGCTATGATTTTTTGTTTTGTGGAGTTTACTGAACCCAAATGTGCTCTCACCGCAATGGAAGCTCTACAAGGCTACAAGTTTGATGATAAAAAGCCCGATTCACCAACCTTAAAAATCAAGTTTGCACACTTTCCTTTCCGCCCACCAACTGATGACGGACAATAA 690 0.4333 MTDPYYPYPTPAPSDGASFARSSYAGYIPSEAPSLASPLPKSTDFPGYGSDYLNKDVSLFRMEPYGVDDTRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIKFAHFPFRPPTDDGQ* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3783 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 219 IPR000504 GO:0003723
Mtr3g3783 229 SMART rrm1_1 134 215 IPR000504 GO:0003723
Mtr3g3783 229 CDD RRM_RBPMS_like 133 215 - -
Mtr3g3783 229 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 222 - -
Mtr3g3783 229 SUPERFAMILY RNA-binding domain, RBD 81 206 IPR035979 GO:0003676
Mtr3g3783 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 206 IPR000504 GO:0003723
Mtr3g3783 229 PANTHER PROTEIN COUCH POTATO 9 222 - -
Mtr3g3783 229 Gene3D - 127 219 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3783 Mtr-Chr3 51694514 51699528 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3783 - - lang:109343815 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3783 3 51694514 51699528 Mtr3g3783 3 51694514 51699528 ECH