Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3766 ATGGCGGAAGAAGCACAGTACGCAACCCTAAAACGTAAATACGATGACCAACCCACCGCCACTGACATCGAACTCGAAGTCGCAAACGCCAAACAACGAGCTCAAGAAGTCGCCGCTCGTCTTCTCAGCGTCACCGGCGCTCCACCACTCTCCTACGATCCCAAACGAACCAAGTCCGATAACGGTGCTCCACAATCGGGGTTTGATTCTTACGATTTGAAGCCGCAATATTCACAACAAGGTGGTAGTTATGGTTCTAGTAAGAAGATTGAAATACCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAGGAGGTGAAACTATTAAGTATCTTCAGATGCAATCTGGTGCTAAGATTCAAGTTACTCGTGATATGGATGCTGATCCTAATTCTCAGACTAGGATGGTTGAACTTATGGGTACTCCTGATGCTGTTTCTTCTGCTGAGAAACTCATCAATGAAGTCCTTGCCGAGGCTGAAGCTGGGGCTTCTGTCGGTGGCACTAGACGGATGGTTGCACAATCTGGGGGGGATGAATTTGTGATGCAAATACCAAACAATAAGGTTGGCCTTATAATCGGTAAAGGAGGAGAAACAATTAAGGGTATGCAAGCTTCTACTGGAGCACGAATTCAGGTGATACCTTTGCATCCTCCCCCAGGTGATACATCAACAGAAAGAACATTAAAAATCGATGGGACCCCTGATCAAATTGAATCAGCAAAGCAATTGGTTAATCAAATCCTCACTGGTGAGAATCGTCTCAGAAATTCAGGGAACTCGGGTGGTTATACTCAGCAAGGTTACCAATCCCGACCACCGTCTAGCTGGGCTCCTCCTGCTGCTCCTGTGCAACAAGCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGTCCATCACCCCAGTATAACACGCCTCAGCCACCATACACAGGCTATCCTCCTCAGCAACCCGGTGGATATTCCGCCAACTGGGACCAATCCACTGCACCATCTCACCAGCAGTCTACTCATGCAAGTGGTTATGATTATTACAATCAACAACCCCAGCAACAGCAAAATCCTGGGGGTCCTTCACAGCCAGCCGATGGGTCTGCATACAGTTACAGTCAACCCCCTTCATCTGGTTATAGCCAACCAGGACAGGGTTATGGTCAGGAAAGCTATGGTGCATATAATGCGCAGCAACAATCTGGGTATGGTCAGCCACAAACATATGATCAGCAACAAGGTTATGGCTCTGCTCCCAGTTATGGCAGTGGGAGTAATCCAACCCAAGAAGGGCACACTTCAAACTATGGATCACAAGCAGATACCTCCCAAACTTCCCAACCCACTACTGTTGCCCAGCAAGGCTATGCTACCAACCAACAAGGAACTCCTCAACCAGGTTATGCGGTAGCCCCTACGTCCCAAGCGACCTATGGAAGTCAACCACAGTCTGGTTATGGAACTGGTTATGGTGCTCCTCCCTCTCAAAAGCCAAGTGCAAATCCACCTGTTTATGGTCAGTCACAGTCACCTAGCACAGCAGCAGGCTATGGTCAGTCAGCATATCCCTCTAGCCAGGCCCCACCTTCTGGATATGCTCAACCAGAGTTAGGAACTCAGAGAGCACCAGTGCAACCAGGGTATGGTCCGCAATCATATGGTGCTCCTCAAGGTGGCCAGCCTAGCTATGGCCAGACTCCAGCGTCATATGGAAATAGTTCTTATGGTGCTGGTTATGCTCAGGCTCCAGCATATGCTAGCGATGGAGCAACTGCACAGGCTGTTCCACAGGGCGGTGTTGCTAAAGTCTCACCCAAGAGTTGA 1818 0.4895 MAEEAQYATLKRKYDDQPTATDIELEVANAKQRAQEVAARLLSVTGAPPLSYDPKRTKSDNGAPQSGFDSYDLKPQYSQQGGSYGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAGASVGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKGMQASTGARIQVIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPAAPVQQAGYGYGQPGSYSGPSPQYNTPQPPYTGYPPQQPGGYSANWDQSTAPSHQQSTHASGYDYYNQQPQQQQNPGGPSQPADGSAYSYSQPPSSGYSQPGQGYGQESYGAYNAQQQSGYGQPQTYDQQQGYGSAPSYGSGSNPTQEGHTSNYGSQADTSQTSQPTTVAQQGYATNQQGTPQPGYAVAPTSQATYGSQPQSGYGTGYGAPPSQKPSANPPVYGQSQSPSTAAGYGQSAYPSSQAPPSGYAQPELGTQRAPVQPGYGPQSYGAPQGGQPSYGQTPASYGNSSYGAGYAQAPAYASDGATAQAVPQGGVAKVSPKS* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3766 605 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 43 590 - -
Mtr3g3766 605 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g3766 605 SMART kh_6 176 250 IPR004087 GO:0003676
Mtr3g3766 605 SMART kh_6 84 157 IPR004087 GO:0003676
Mtr3g3766 605 CDD KH-I 87 152 - -
Mtr3g3766 605 Coils Coil 20 40 - -
Mtr3g3766 605 MobiDBLite consensus disorder prediction 252 274 - -
Mtr3g3766 605 MobiDBLite consensus disorder prediction 499 531 - -
Mtr3g3766 605 MobiDBLite consensus disorder prediction 553 574 - -
Mtr3g3766 605 MobiDBLite consensus disorder prediction 43 89 - -
Mtr3g3766 605 MobiDBLite consensus disorder prediction 58 87 - -
Mtr3g3766 605 ProSiteProfiles Type-1 KH domain profile. 177 245 - -
Mtr3g3766 605 Gene3D K Homology domain, type 1 174 274 IPR036612 GO:0003723
Mtr3g3766 605 Gene3D K Homology domain, type 1 77 173 IPR036612 GO:0003723
Mtr3g3766 605 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 43 590 - -
Mtr3g3766 605 CDD KH-I 179 245 - -
Mtr3g3766 605 Pfam KH domain 88 154 IPR004088 GO:0003723
Mtr3g3766 605 Pfam KH domain 181 246 IPR004088 GO:0003723
Mtr3g3766 605 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 180 295 IPR036612 GO:0003723
Mtr3g3766 605 ProSiteProfiles Type-1 KH domain profile. 85 152 - -
Mtr3g3766 605 MobiDBLite consensus disorder prediction 252 578 - -
Mtr3g3766 605 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 87 163 IPR036612 GO:0003723
Mtr3g3766 605 MobiDBLite consensus disorder prediction 318 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3766 Mtr-Chr3 51489256 51493662 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3766 K13210 - gmx:100813135 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3766 3 51489256 51493662 Mtr3g3766 3 51489256 51493662 ECH