Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3765 ATGGCGGAAGAAGCACAGTACGCAACCCTAAAACGTAAATACGATGACCAACCCACCGCCACTGACATCGAACTCGAAGTCGCAAACGCCAAACAACGAGCTCAAGAAGTCGCCGCTCGTCTTCTCAGCGTCACCGGCGCTCCACCACTCTCCTACGATCCCAAACGAACCAAGTCCGATAACGGTGCTCCACACTCGGGGTTTGATTCTTACGATTTGAAGCCGCAATATTCACAACAAGGTGGTAGTTATGGTTCTAGTAAGAAGATTGAAATACCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAGGAGGTGAAACTATTAAGTATCTTCAGATGCAATCTGGTGCTAAGATTCAAGTTACTCGTGATATGGATGCTGATCCTAATTCTCAGACTAGGATGGTTGAACTTATGGGTACTCCTGATGCTGTTTCTTCTGCTGAGAAACTCATCAATGAAGTCCTTGCCGAGGCTGAAGCTGGGGCTTCTGGCGGTGGAACTAGACGGATGGTTGCACAATCTGGGGGTGATGAATTTGTGATGCAAATACCAAACAATAAGGTTGGCCTTATAATCGGTAAAGGAGGAGAAACAATAAAGAGTATGCAAGCTTCTACCGGAGCACGAATTCAGGTGATACCTTTGCATCCTCCCCCAGGTGATACATCAACAGAAAGAACATTAAAAATCGATGGGACCCCTGATCAGATTGAATCAGCAAAGCAATTGGTTAATCAAATCCTCACTGGTGAGAATCGTCTCAGAAATTCAGGGAACTCCGGTGGTTATACTCAGCAAGGTTACCAATCCCGACCACCGTCTAGCTGGGCTCCTCCTCCTGCTCCTGTGCAACAAGCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGTCCATCACCGCAGTATAACATGCCTCAGCCACCATATGCAGGCTATCCTCCTCAGCAACCCGGTGGATATTCCGCCAACTGGGACCAATCCACCGCACCATCTCACCAGCAGTCTACTCATGCAAGTGGTTATGATTATTACAACCAACAACCCCAGCAACAGCAAAATCCTGGGGGTCCTCCACAGCCAGCTGATGGGTCTGGATACAGTTACAGTCAACCTCCTTCCTCTGGTTATAGCCAACCAGGACAGGGTTATGGTCAGGAAAGCTATGGTGCGTATAATGCACAACAACAATCTGGGTATGGTCAGCCACAAACTTATGATCAGCAACAAGGTTATGGCTCTGCTCCAAGTTATGGAAGTGGGAGTAATCCAACCCAAGAGGGGCACACTTCCAACTATGGATCACAAGCGGATACCTCCCAAACTTCCCAACCCACTACTGTTGCTCAGCAAGGTTATGCTACCAACCAACCAGAAACTCCTCAACCAGGTTATGCGGTAGCCCCTACCACCCAAGCGGCCTATGGAAGTCAACCACAGTCTGGTTATGGACCTAGTTATGGTGCTCCTCCCTCTCAGAAGCCAAGTGCAAATCCACCTGTTTATGGTCAATCACAGTCACCTAGCACAGCAGGAGGCTATGGTCATTCAGCATATCCCTCTAGCCAGGCCCCGCCTTCTGGATATGCTCAGCCAGAGTTGGGCACTCAGAGAGCACCAGTGCAACCAGGGTATGGTCCGCAATCATATGGTGCTCCTCAAGGTGGCCAGCCTGGCTATGGCCAGACTCCACCGTCATATGGGAATAGTTCTTATGGTGGCAGTTATGCTCAGGCTCCAGCGTATGCTAGCGATGGAGCAACTGCACAGGCTGTTCCACAGGGCAGTGTTGCTAAAGTGTCACCCAAGAGTTGA 1818 0.4928 MAEEAQYATLKRKYDDQPTATDIELEVANAKQRAQEVAARLLSVTGAPPLSYDPKRTKSDNGAPHSGFDSYDLKPQYSQQGGSYGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAGASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPPAPVQQAGYGYGQPGSYSGPSPQYNMPQPPYAGYPPQQPGGYSANWDQSTAPSHQQSTHASGYDYYNQQPQQQQNPGGPPQPADGSGYSYSQPPSSGYSQPGQGYGQESYGAYNAQQQSGYGQPQTYDQQQGYGSAPSYGSGSNPTQEGHTSNYGSQADTSQTSQPTTVAQQGYATNQPETPQPGYAVAPTTQAAYGSQPQSGYGPSYGAPPSQKPSANPPVYGQSQSPSTAGGYGHSAYPSSQAPPSGYAQPELGTQRAPVQPGYGPQSYGAPQGGQPGYGQTPPSYGNSSYGGSYAQAPAYASDGATAQAVPQGSVAKVSPKS* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3765 605 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 43 590 - -
Mtr3g3765 605 SMART kh_6 176 250 IPR004087 GO:0003676
Mtr3g3765 605 SMART kh_6 84 157 IPR004087 GO:0003676
Mtr3g3765 605 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g3765 605 CDD KH-I 87 152 - -
Mtr3g3765 605 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 88 162 IPR036612 GO:0003723
Mtr3g3765 605 MobiDBLite consensus disorder prediction 590 605 - -
Mtr3g3765 605 Coils Coil 20 40 - -
Mtr3g3765 605 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 180 295 IPR036612 GO:0003723
Mtr3g3765 605 MobiDBLite consensus disorder prediction 499 531 - -
Mtr3g3765 605 Pfam KH domain 88 154 IPR004088 GO:0003723
Mtr3g3765 605 Pfam KH domain 181 246 IPR004088 GO:0003723
Mtr3g3765 605 MobiDBLite consensus disorder prediction 72 87 - -
Mtr3g3765 605 Gene3D K Homology domain, type 1 77 174 IPR036612 GO:0003723
Mtr3g3765 605 Gene3D K Homology domain, type 1 175 273 IPR036612 GO:0003723
Mtr3g3765 605 MobiDBLite consensus disorder prediction 43 89 - -
Mtr3g3765 605 MobiDBLite consensus disorder prediction 252 273 - -
Mtr3g3765 605 ProSiteProfiles Type-1 KH domain profile. 177 245 - -
Mtr3g3765 605 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 43 590 - -
Mtr3g3765 605 CDD KH-I 179 245 - -
Mtr3g3765 605 ProSiteProfiles Type-1 KH domain profile. 85 152 - -
Mtr3g3765 605 MobiDBLite consensus disorder prediction 556 578 - -
Mtr3g3765 605 MobiDBLite consensus disorder prediction 252 605 - -
Mtr3g3765 605 MobiDBLite consensus disorder prediction 321 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3765 Mtr-Chr3 51479950 51484619 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3765 K13210 - gmx:100813135 628.246