Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3720 ATGGATACGTGGAAGAACATCAAAGACAGAGAATCCGGAAAATTGCGTCCAAATTCCTTCGCTAATCGCATAAAATCAAATCGAATTTCACAACTCGAGTTATCAAATCACAAAGAACTCGTTTCCCCTCACAAAGGTTCCATTAATTCCCTTCAAATTGATTTAACTGAAGGAAGATATTTGTTATCTGCTGCATCAGATGCATCCGTAGCGGTTTACGACGTTCACCGGCCAAGCGATTTCAACGGAGATGGTTTGATAACGAAACACAATTGTTTATTTTTTGTTGATAAGCAACACCAATTAGCTCATAAATATGCTGTATCTTCAGCTATTTGGTATCCCATTGATACTGGTTTATTCATCACTGGTTCTTATGATCATCATGTTAATGTTTGGGACACTAACACCACTCAGGTGGTGGTGAATTTCAAAATGCCTGGAAAGGTGTATAAGACTGCAATGTCTACATTGTCAACATCTCATACACTTATTGCTGCTGGAACTGAGGATGTACAAGTTCGTCTTTGTGATATTGCTTCTGGTGCATTTGCTCATACTTTGTCTGGTCATCGTGATGGTGTAATGACTGTTGAATGGTCTGCTTCAAGTGAATGGGTCTTGATTACCGGGGGGTGTGATGGTGCAATACGTTTTTGGGACATAAGGCGTGCTGGTTGTTTCCAAGTTTTAAATCAATCTCAGACGCAGCTTGGAAGACGTCCACCTCTACTCAAACGTTCCGTGCTAACTAAGGAATCAAATACAAAAATGCGTCCTGTACAGAAGAAAGTTGCCAATGGAAGTGGCAGTGGACATCTGCCAATTGGCAGGCTATCATCTAAGGGTCCAATGAAGCAGAAATTACATCCAGGAATGATTTCTACTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGATTGAAAGTAACAGAGGATGGCATGTATCTCTTAAGTGCAGGGTCTGATTCAAGATTGAGATTGTGGGATGTTGAGTCAGGCTGCGACACACTTGTGAACTTTGAAACAGTCCGCTTGCAAACAAGCAAACCTATTCAATTAGCTACAACTCAAGACTCGACCGTTGTTTTTGTTCCATGCATGAGGGTTGTGAAAGCATTTGATATGTGGTCTGGGAACGCACGTACGATACTACGTGGACACTATGAGTCTGTAAACTCCTGCTGGTTTAATCAACAAGATCAGGAGTTGTACACAGGTGGAAACGATAGACAAATTCTTGTATGGTCGCCTGCAAGGTCAATTGCTGATGAAATGGGCGAAGGAGATCCCGACGACCAGGATAGCTGGAGTAACTGA 1326 0.4216 MDTWKNIKDRESGKLRPNSFANRIKSNRISQLELSNHKELVSPHKGSINSLQIDLTEGRYLLSAASDASVAVYDVHRPSDFNGDGLITKHNCLFFVDKQHQLAHKYAVSSAIWYPIDTGLFITGSYDHHVNVWDTNTTQVVVNFKMPGKVYKTAMSTLSTSHTLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRRAGCFQVLNQSQTQLGRRPPLLKRSVLTKESNTKMRPVQKKVANGSGSGHLPIGRLSSKGPMKQKLHPGMISTQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVESGCDTLVNFETVRLQTSKPIQLATTQDSTVVFVPCMRVVKAFDMWSGNARTILRGHYESVNSCWFNQQDQELYTGGNDRQILVWSPARSIADEMGEGDPDDQDSWSN* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3720 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 143 IPR001680 GO:0005515
Mtr3g3720 441 Gene3D - 4 422 IPR015943 GO:0005515
Mtr3g3720 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 341 IPR001680 GO:0005515
Mtr3g3720 441 Pfam WD domain, G-beta repeat 385 419 IPR001680 GO:0005515
Mtr3g3720 441 Pfam WD domain, G-beta repeat 301 332 IPR001680 GO:0005515
Mtr3g3720 441 Pfam WD domain, G-beta repeat 116 134 IPR001680 GO:0005515
Mtr3g3720 441 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Mtr3g3720 441 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Mtr3g3720 441 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Mtr3g3720 441 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Mtr3g3720 441 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 4 440 IPR042238 GO:0006283
Mtr3g3720 441 SMART WD40_4 181 221 IPR001680 GO:0005515
Mtr3g3720 441 SMART WD40_4 380 419 IPR001680 GO:0005515
Mtr3g3720 441 SMART WD40_4 95 134 IPR001680 GO:0005515
Mtr3g3720 441 SMART WD40_4 33 74 IPR001680 GO:0005515
Mtr3g3720 441 SMART WD40_4 290 332 IPR001680 GO:0005515
Mtr3g3720 441 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Mtr3g3720 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 419 IPR001680 GO:0005515
Mtr3g3720 441 MobiDBLite consensus disorder prediction 263 287 - -
Mtr3g3720 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 419 - -
Mtr3g3720 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 336 - -
Mtr3g3720 441 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
Mtr3g3720 441 SUPERFAMILY WD40 repeat-like 42 421 IPR036322 GO:0005515
Mtr3g3720 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 223 - -
Mtr3g3720 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 230 IPR001680 GO:0005515
Mtr3g3720 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 41 75 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3720 161 336 Miscellaneous Gene Families AT5G08390 25.000 5.55e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3720 K10570 - gmx:100815581 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3720 3 51004602 51011847 Mtr3g3720 3 51004602 51011847 ECH