Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3691 ATGTCGAACAATCGTTTCATTCCTAACGATTCTGTCGATAACGGTGATTCGCCGTTATCACCTCGATCACAGTGGTTCAGTTACATAGCATCGTTAACCCAAAACCAGAACCAGAACAATAACCATAACCAAAACCCTTTCATGTCTCAAATCGAAAACCCTAATCAAACCCTAGAACAAGCTTTTTCTCGTCTTTCTGTTGCTAATCCTAATCCTAATCAATCTTTTGGTTATGGTGTTGCTAATAATCTTAATGATTATGATTACTCTGGTCTTGGTGTTAGTGTTAATCCTTATTATAACTATAACTATGGGATTCAACTCTCTAATCCTAGTCAACCTGATTTCAATAGACCTGTTAGGAATAATAATAACATAGCTTATGGTAGAGGAATTTCGTCGCCGTCGCCGCGGTTGAGTTCTTATGATGTAAATCAGATTAGGTATAATCATTTGAATGGGGGTATTGGTGGTGGTGGTTATGGTAATGATATGTTTTATGGTAGTGAAGAACTTATGAGAAATTTTCAATGTGCTTTAAGGAATGAATCCTCTGTGCCAACTTGGGTTAATGATGGTGTTAATGTTAATAATGTTAATGTGAATGGAATGAGTGCACATTGGTTTGATGAATTTCGTGGGAGGGTTTATTCGTTAGCGAAGGATACACATGGGAGCAAGATTTTGCAAGAAGTGATGGAAAATTTGGGACCTGAAGGGGTTTCATACTTTTTCTTGGAGCTGATTAATCACATGTGTGAGTTGATGGTTGATCCTATTGGTTATGAGGTCATTACAAAAATGGTGGAAGTTTGTAACCAAGATCAAAAGACTCAAATTGTTCTGTTGGTCACACACCATGGTGCTCAGTTTATCAGAATCTGCCTTAGTCTTCATGGATCTCGTTCTGTTGAGAAACTGTTGGAGAAAGTTACCACCAGAGAGCAAAGAGGTCTAATTATGTCAGCTTTGACCCCTGGAGCTATTGTATTGTCTAAGGATATCAATGGTCATCGTGTGGTTTTCAATTGTTTGAAAAATTTCCCACATGCTGATACTGAGAAATTCCTGGGAGTTATTGCAAGAAATTCTTTGTCACTTTCAAGAGATAAGACCGGATGTTGTGTGCTGCAGTATTGTGTTAGCCATGCTCAAGGAGCAACTAAGAATCTTCTGATTCATGAAATAATACTTCATGCTCCACTATTAGCAGAAGATTGTTACGGCAACTATGTGATTCAACATCTAATATCTCTGAAAATACCAACAGTCTCAGGCAACCTACACCATCAGCTTCAGCAGCAATTTGTATCTCTTTCCTGCAATAAATATGGCAGTAATGTAGTGGAAAAGTTTTTGCATGATTCAGGAGTGGATATATCTTCCTGCATCATTATAGAATTGCTAAATGATCCTAATGTAACAAGGCTCCTTACGGATCCTTATGGAAATTTTGTCATCAGTACTGCATTGAATAAATTTAAGGGTGCTAGATTCATTAAGAATGCCTTGGAGGAACTGGTCGAAGCAAATTCTCAAATGATGCGTAGCAATATGTTTGGCAAAAAGGTGCTTGATAAGTTTGAGGGTAAAAATCGGCGTAATAATATATAA 1614 0.3748 MSNNRFIPNDSVDNGDSPLSPRSQWFSYIASLTQNQNQNNNHNQNPFMSQIENPNQTLEQAFSRLSVANPNPNQSFGYGVANNLNDYDYSGLGVSVNPYYNYNYGIQLSNPSQPDFNRPVRNNNNIAYGRGISSPSPRLSSYDVNQIRYNHLNGGIGGGGYGNDMFYGSEELMRNFQCALRNESSVPTWVNDGVNVNNVNVNGMSAHWFDEFRGRVYSLAKDTHGSKILQEVMENLGPEGVSYFFLELINHMCELMVDPIGYEVITKMVEVCNQDQKTQIVLLVTHHGAQFIRICLSLHGSRSVEKLLEKVTTREQRGLIMSALTPGAIVLSKDINGHRVVFNCLKNFPHADTEKFLGVIARNSLSLSRDKTGCCVLQYCVSHAQGATKNLLIHEIILHAPLLAEDCYGNYVIQHLISLKIPTVSGNLHHQLQQQFVSLSCNKYGSNVVEKFLHDSGVDISSCIIIELLNDPNVTRLLTDPYGNFVISTALNKFKGARFIKNALEELVEANSQMMRSNMFGKKVLDKFEGKNRRNNI* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3691 537 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 181 532 IPR033133 GO:0003723
Mtr3g3691 537 ProSiteProfiles Pumilio RNA-binding repeat profile. 431 467 IPR001313 GO:0003723
Mtr3g3691 537 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 37 529 - -
Mtr3g3691 537 PANTHER PUMILIO HOMOLOG 15 37 529 - -
Mtr3g3691 537 Gene3D - 197 536 IPR011989 -
Mtr3g3691 537 ProSiteProfiles Pumilio RNA-binding repeat profile. 359 394 IPR001313 GO:0003723
Mtr3g3691 537 ProSiteProfiles Pumilio RNA-binding repeat profile. 247 282 IPR001313 GO:0003723
Mtr3g3691 537 SMART pum_5 395 430 IPR001313 GO:0003723
Mtr3g3691 537 SMART pum_5 247 282 IPR001313 GO:0003723
Mtr3g3691 537 SMART pum_5 359 394 IPR001313 GO:0003723
Mtr3g3691 537 SMART pum_5 323 358 IPR001313 GO:0003723
Mtr3g3691 537 SMART pum_5 211 246 IPR001313 GO:0003723
Mtr3g3691 537 SMART pum_5 469 505 IPR001313 GO:0003723
Mtr3g3691 537 SMART pum_5 431 466 IPR001313 GO:0003723
Mtr3g3691 537 SMART pum_5 286 322 IPR001313 GO:0003723
Mtr3g3691 537 SUPERFAMILY ARM repeat 201 528 IPR016024 -
Mtr3g3691 537 Pfam Pumilio-family RNA binding repeat 435 468 IPR001313 GO:0003723
Mtr3g3691 537 Pfam Pumilio-family RNA binding repeat 291 324 IPR001313 GO:0003723
Mtr3g3691 537 Pfam Pumilio-family RNA binding repeat 251 281 IPR001313 GO:0003723
Mtr3g3691 537 Pfam Pumilio-family RNA binding repeat 403 417 IPR001313 GO:0003723
Mtr3g3691 537 Pfam Pumilio-family RNA binding repeat 215 242 IPR001313 GO:0003723
Mtr3g3691 537 Pfam Pumilio-family RNA binding repeat 365 397 IPR001313 GO:0003723
Mtr3g3691 537 ProSiteProfiles Pumilio RNA-binding repeat profile. 211 246 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3691 Mtr-Chr3 50760821 50764276 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3691 - - mtr:MTR_3g102650 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3691 3 50760821 50764276 Mtr3g3691 3 50760821 50764276 ECH