Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3645 ATGAAGTTTGCCTCCACTACAATTCCCTGCTGCCTCAGAAGCAGACCCAATCTTTCTCTGTTTCACTCTCTCTTCCAAAATGCGACGAGCCCTGCACTTGTTATATTTCGCCAAATTTTACAAGCTAACGTGAACCCAAATGAATTCACTTTTTCATTACTCATCAAAGCTTATCTTTCATCTCCTTCTTTCACTCATTGTCCATCAACCGCTGCTTTACAAGCACGTCAGATTCAAACCCAGTGTCTCAAACGCGGTGTTAACCAATTTATTCATGTTCATACTTCTCTTATTGATTTGTACATGAAACTTGGTTTTACCTCTCATGCACGCAACATGTTTGATCAAATGTCTTATAGAGACGTTGTTTCATGGAATGTATTGATTTGTGGTTATTCACAAAATGGGTATCTTTATCATGCTATTCAACTCTTTGTAGACATGTTAAGAGAGAATTTTAAGCCTAATCAAACTACAATTGTTAGTTTGTTACCTTCTTGTGGTTGCTTCGAGCTGATTTTTCAAGGTAGGTCCATTCATGGGTTTGGAATTAAAGCTGGTTTTGGTTTGGATTCTCATTTGAATAATGCTCTTATGTCAATGTATGCTAAATGTGATGATTTGGAAGCTTCCCAACTTTTGTTTGATGAAATGGACGAGAAGAGTGTTGTTTCTTGGAATACTATGATTGGCGTGTATGGTCAAAATGGTCTTTTTGACAAGGCTATTCTTTACTTTAAAGAGATGCTGAAGGAAGGTTTCCACCCTAGTTCGGTTACGATAATGAACCTTGTATCGGCAAATGCTTTTCCGGAAAATGTTCATTGTTATGTTGTCAAATGTGGCTTCACCAATGATGCTTCTGTTGTTACTTCGCTGGTTTGTCTATATGCAAAGCAAGGGTTCACAAATACGGCGAAACAACTTTACAAATATTATCCCACAAAAGACTTGATTACGTTAACAGCGATAATCTCTAGCTATTCTGAAAAAGGTGATATAGAGTCTGCAGTTGAGTGTTTTATCCAAACTATTCAGTTAGATATAAAACCAGATGCAGTTGCTTTGATTGGTGTACTTCATGGAATTACTAATCCTTCACATTTTGCTATTGGATGCACTTTCCACGGTTATGGTGTGAAGAGTGGGTTGTCTAATGATTGCTTGGTTGCAAATGGGCTAATAAGTTTGTATTCTAGATTTGACGAGATAGAAGCCGCTTTATCTCTGTTTTATGATATGAGAGAAAAACCACTGATCACATGGAATTCTATGATATCTGGCTGTGTGCAGGCTGGAAAGTCAAGTGATGCCATGGAGTTGTTCTCTGAAATGAGCATGTGTGGGAAAAAACCAGATGCCATTACTATCGCTAGTCTACTTTCTGGGTGTTGCCAGCTTGGTAACCTGCGGATTGGAGAGACGCTGCATAGTTACATTCTGAGGAACAATGTGAGAGTAGAAGATTTTATAGGAACTGCTCTGATAGACATGTATAGCAAGTGTGGAAGACTAGATTATGCTGAAAAGGTATTTTATAACATCAAGGATCCATGTTTGGCAACATGGAATGCCATCATATCAGGTTATAGTTTATATGGTCTTGAGCATACAGCTTTCGGTTGTTATTCTAAACTGCAAGAACAAGGGTTAAAACCGGATAAAATCACCTTCTTGGGAGTTTTGGCAGCATGCACGCATGGGGGACTTGTCTATTTAGGACTGGAATACTTCAATATCATGACTAAAGAGTATGGTTTGATGCCCAGTCTGCAACATTATGCATGCATAGTTGCTCTATTAGGTAAAGAAGGCTTGTTCAAGGAAGCAATTGAATTTATAAACAAAATGGAGATTCAGCCCGATTCTGCTGTCTGGGGAGCTTTGTTAAATGCTTGTTGCATCCAACGAGAGGTGAAGCTTGGGGAATGCTTGGCAAAAAAATTGTTTCTATTAAATCACAAAAATGGTGGATTTTATGTATTAATGTCAAATCTTTATGCCATTGTTGGGAGATGGGATGATGTAGCAAGGGTGAGGGAAATGATGAAAGATAGTGGAGGAGATGGATGTTCAGGTGTTAGTGTTATTGATGTGATTTCTGCTGATGACTCTAATAACAACAACAACTTAGGCCCAAGTGAAGTCTATTTGAATACAAGCATTTGGCAGCATTTGTGTCTATATTGA 2190 0.3826 MKFASTTIPCCLRSRPNLSLFHSLFQNATSPALVIFRQILQANVNPNEFTFSLLIKAYLSSPSFTHCPSTAALQARQIQTQCLKRGVNQFIHVHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVDMLRENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEASQLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLVSANAFPENVHCYVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTAIISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGYGVKSGLSNDCLVANGLISLYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGKSSDAMELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGTALIDMYSKCGRLDYAEKVFYNIKDPCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGLKPDKITFLGVLAACTHGGLVYLGLEYFNIMTKEYGLMPSLQHYACIVALLGKEGLFKEAIEFINKMEIQPDSAVWGALLNACCIQREVKLGECLAKKLFLLNHKNGGFYVLMSNLYAIVGRWDDVARVREMMKDSGGDGCSGVSVIDVISADDSNNNNNLGPSEVYLNTSIWQHLCLY* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3645 729 PANTHER OS07G0578800 PROTEIN-RELATED 313 728 IPR045215 GO:0003723|GO:0009451
Mtr3g3645 729 PANTHER OS07G0578800 PROTEIN-RELATED 54 220 IPR045215 GO:0003723|GO:0009451
Mtr3g3645 729 PANTHER OS07G0578800 PROTEIN-RELATED 213 311 IPR045215 GO:0003723|GO:0009451
Mtr3g3645 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Mtr3g3645 729 Gene3D Tetratricopeptide repeat domain 277 366 IPR011990 GO:0005515
Mtr3g3645 729 Gene3D Tetratricopeptide repeat domain 183 276 IPR011990 GO:0005515
Mtr3g3645 729 Gene3D Tetratricopeptide repeat domain 367 489 IPR011990 GO:0005515
Mtr3g3645 729 Pfam PPR repeat family 120 166 IPR002885 -
Mtr3g3645 729 Pfam PPR repeat family 420 466 IPR002885 -
Mtr3g3645 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Mtr3g3645 729 Pfam PPR repeat 493 515 IPR002885 -
Mtr3g3645 729 Pfam PPR repeat 320 343 IPR002885 -
Mtr3g3645 729 Pfam PPR repeat 596 618 IPR002885 -
Mtr3g3645 729 Pfam PPR repeat 392 417 IPR002885 -
Mtr3g3645 729 Pfam PPR repeat 522 551 IPR002885 -
Mtr3g3645 729 Pfam PPR repeat 196 222 IPR002885 -
Mtr3g3645 729 Pfam PPR repeat 224 254 IPR002885 -
Mtr3g3645 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Mtr3g3645 729 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 313 728 - -
Mtr3g3645 729 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 54 220 - -
Mtr3g3645 729 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 213 311 - -
Mtr3g3645 729 TIGRFAM PPR: pentatricopeptide repeat domain 522 554 IPR002885 -
Mtr3g3645 729 TIGRFAM PPR: pentatricopeptide repeat domain 123 156 IPR002885 -
Mtr3g3645 729 TIGRFAM PPR: pentatricopeptide repeat domain 420 454 IPR002885 -
Mtr3g3645 729 TIGRFAM PPR: pentatricopeptide repeat domain 224 257 IPR002885 -
Mtr3g3645 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Mtr3g3645 729 Gene3D Tetratricopeptide repeat domain 26 175 IPR011990 GO:0005515
Mtr3g3645 729 Gene3D Tetratricopeptide repeat domain 493 710 IPR011990 GO:0005515
Mtr3g3645 729 Pfam E motif 638 697 IPR046848 -
Mtr3g3645 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3645 Mtr-Chr3 50273621 50280052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3645 47 700 Glycoside Hydrolase AT3G49170 30.906 4.60e-104 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3645 - - gmx:100787089 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3645 3 50273621 50280052 Mtr3g3645 3 50273621 50280052 ECH