Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3580 ATGCGTGTCACCGGGGATCTAGGGTTTAGGAGCCTGGTCCTTGTGGTGGTTTGTGTGGTGGTTCCGGTGATCGGATTTGTAATTCGTCGGAAATGGCAAATTGCGGTGGCTAGAAATGAAGAGATCAAGAGGCTCTTGATTTTGGCTGCTGAGGAAACTGCCAGGGTTGAGAGAGAGACGTTGTATTCCTCCGGTGCGGTGGTTTCCGCCACTAACAATTATCAATGTGCTCTCTGCTATTTTCCTGCCACTGCGCGCTGCGCTAAGTGCAAATCTGTTCGATACTGCTCTACCGGTTGCCAAACAGTTCATTGGCATCAGGGTCATAAATTTGATTGTCGTCCTCCTAGCAAAACTCATCGGAGCAATGGCGTTAGTGATATTGGAAAGAGGGAATTGGAGCATGATTACTCTGGTAACCATGAGGAGAAATCTGAAAACAGAGGTGCAGAGTGTAAAATACCCTATGAAGATACCGGCTTTTCTCCTGAGGTTTCATTTGGAAAGGATGATAATATTCGTGCTGGGTTCCTTGCAGAGGAAAATTTAGCAGATTCTAATTCTGAATTTTCCAGTAACTCATTTTCTGGATTTTCGGCTTCCACAAGTTCTGGTGATTCATCTGATGATTCGTCTGTCTGTGAGAGTATCATCTCAAATGAGCATGACATATCAGAGGGACATGTTTCTGTTGCTCACACCCTTGACCTTACTGATAAAACCACAATTGATAGCAAGGTGGATGCAGCAATGTCTTCTTCACCAAAGTTTGCTAGTTTGCTTGATTCAGTTGATGGTTCTTCTACAGTTCATAAGTTAAATCATGTCGCTCCTGGTTCTAGTAATGAAGAGAGGAAGGTTGGATCAAATGGTGCCTTAGGCTCGAGCATAGGGAAGGGGGCGAAAATTGAGCCTTCTGGATTCTGGGATAAAGCTCTTGACTCGAGAGGGATTAAAGATGACACTTATCCATCCCATTCTGATGAATCAGCTGGTGAAAAGACCGACTCTGGATTGTCATTTCGCTTTCAATTCAGTACCACACCTCCTTTGCATATACAAGATACCAAGGCTAAAGAATCTTCGAATGATGACACTCTTCCAAACCCTGTTGGGAAGAATATGCCACATCCAGGACCAGCATCATCTGAAAATGTAATTCATTCTTCAAAGGCAAGGAACCTCTCATTCATCAACGGCAAAGATGCCAATATTATGAGCACTACTCCCGGTGGTTCTGAACATGATCAATTAGAATCTAAAGACAGGTCTGAGCCGCCTCTATATTCTTTTTCCTCCCAAACCTCTAGTATTGGCAAAGATCCAGGTTCTGCAGATGCTATGAGCATACATAACTTTCAATCATCTAGCTCTGTGGCATCAAATCATGTTATGGACAACCATGGCTGCACCTTGAAGTCTACCGATATTAGATGCCAGACACGTGGGCTTGCTGATTCTAAATTAGTTTCTACAATTGAAGTAAATTCACATCCCGGTACAAAACATAGGAAGAATGAATATGGGACTGTCACTTCTTCTCATGCTGCTAGCTATTCTGCAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTAAAAGTTGTTGATCAGTTTAGAGGATCAAATTTGTCAAAGCACGTTCCTTCAGCAGCCAGGAGTGATATTGCTGGAAAATACAATGACAAGGGTTTTTTTCCATATGAAACATTTGTCAAGCTTTATAACTCCAACAAGGTGGAGTTGCGCCCATTCGGTCTTATAAATATTGGAAACAGTTGTTATGCTAATGCTGTACTTCAGTGCCTAGCTTTTACACCACCCTTATCTGCTTATTTGGTTCAAGGACTGCACTCTAAATCATGTTCAAATAAAACATGGTGTTTCATCTGTGAATTTGAAAGATTGATTTTCAAGTCAAAGGATACAAAATCTCCACTATCTCCAACAGGCATACTTTCTCAACTACAGAGTATTGGGAGTCAGCTCGGAAATGGCAAAGAAGAAGACGCTCATGAATTTCTAAGGCATGCTATTGACACAATGCAATCTGTATGCCTTATGGAAGCTGGGATTAATGCATCAGGTTCATCGGAAGAGGACACTACTTTAATGGGTCAAACATTTGGAGGATACCTTCGATCGAAGATAAAATGCATGAAATGTGGTGGGAAGTCCGAGCGTCAGGAAAGGATGATGGATCTAACTGTTGAGATAGAAGGGGAGATATCAACACTTGCGGAGGCCCTTCGAAGGTTTACAAGCACTGAGACTTTGGATGGAGAAAACAAGTACCACTGTGTCAGGTGTAAATCTTATCAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCCAATATTCTTACAGTTGCATTGAAGAGATTTCAGTCTGGAAAATTCGGGAAGCTCAACAAGCCTGTTCAATTTCCGGAAATACTTGACCTGGCACCTTTCGTGAGTGGGACCAGCGATAAGACACCCATTTACAGATTGTACGGAGTGGTTGTTCATTTGGATGTTATGAATGCTTCTTTTTCGGGTCACTATGTGTGCTACTTGAAGAATATTCAAAATAAATGGTTCAAGGTTGACGACAGTGTGGTAACAGCAGTTGAATTAGAGAGAGTCTTGACAAAAGGAGCATATATGCTTTTTTATGCAAGGTGCTCTCCAAGGGCCCCAAAATTGATCAGAAACAGGATACTATCCCAAGATTCAAATAGTAAGGTCAATGGAAAGTCTACAAAAGCAAGATCTACGTCATCAAATTCTGGTGCGGCTGAACCCATCAGTAGTTCAGTATCTCCTGATGGCTCACCCACCTTGGAGTCTTTCTATTCAAGGTTTCACCACCTGAAAAAGATTTTGGAGGAAGACTCATCAAGTGATAGTTCATCCCTTTTCAGCAGTAATTCCGATGAAGGTTCTTGCAGTACTGACAGTACCCGTGATTCAACTAGCATGGATGACTTCTCCGATTATATTTTTGGTGATTCAGGGCGCGGATGGAGTAGCACGTGGAGGAATTCTGATTCTGACACATCTTCCTCCTCATCTCCCTTGAATTGTAGACAGTCGCCCCTATCTGATATGGACAAGTATGATTCAGTTTCTCCAGAGGCAACTAATTTTCGGATTCCCACCGGTTCAAGTGCGAAGACAGATAGGGATGATGTTATTTCTCATTTGCATTCTGACACAATTTTACAGCATAGAAAGTTGGATAGTAGTAGCATTAGCAGCAATAGTAGTAGTAAGGACGCTGACTCATTTCTGAAACTAGGATCTAACCATTCAAATGATAAGAACTCTGTTGTATCAAGTAGAAAATCAAGGAAAAGAACGGAATGA 3351 0.4202 MRVTGDLGFRSLVLVVVCVVVPVIGFVIRRKWQIAVARNEEIKRLLILAAEETARVERETLYSSGAVVSATNNYQCALCYFPATARCAKCKSVRYCSTGCQTVHWHQGHKFDCRPPSKTHRSNGVSDIGKRELEHDYSGNHEEKSENRGAECKIPYEDTGFSPEVSFGKDDNIRAGFLAEENLADSNSEFSSNSFSGFSASTSSGDSSDDSSVCESIISNEHDISEGHVSVAHTLDLTDKTTIDSKVDAAMSSSPKFASLLDSVDGSSTVHKLNHVAPGSSNEERKVGSNGALGSSIGKGAKIEPSGFWDKALDSRGIKDDTYPSHSDESAGEKTDSGLSFRFQFSTTPPLHIQDTKAKESSNDDTLPNPVGKNMPHPGPASSENVIHSSKARNLSFINGKDANIMSTTPGGSEHDQLESKDRSEPPLYSFSSQTSSIGKDPGSADAMSIHNFQSSSSVASNHVMDNHGCTLKSTDIRCQTRGLADSKLVSTIEVNSHPGTKHRKNEYGTVTSSHAASYSANSKSGLKTSVLKVVDQFRGSNLSKHVPSAARSDIAGKYNDKGFFPYETFVKLYNSNKVELRPFGLINIGNSCYANAVLQCLAFTPPLSAYLVQGLHSKSCSNKTWCFICEFERLIFKSKDTKSPLSPTGILSQLQSIGSQLGNGKEEDAHEFLRHAIDTMQSVCLMEAGINASGSSEEDTTLMGQTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGEISTLAEALRRFTSTETLDGENKYHCVRCKSYQKAKKKLTVSEAPNILTVALKRFQSGKFGKLNKPVQFPEILDLAPFVSGTSDKTPIYRLYGVVVHLDVMNASFSGHYVCYLKNIQNKWFKVDDSVVTAVELERVLTKGAYMLFYARCSPRAPKLIRNRILSQDSNSKVNGKSTKARSTSSNSGAAEPISSSVSPDGSPTLESFYSRFHHLKKILEEDSSSDSSSLFSSNSDEGSCSTDSTRDSTSMDDFSDYIFGDSGRGWSSTWRNSDSDTSSSSSPLNCRQSPLSDMDKYDSVSPEATNFRIPTGSSAKTDRDDVISHLHSDTILQHRKLDSSSISSNSSSKDADSFLKLGSNHSNDKNSVVSSRKSRKRTE* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3580 1116 SUPERFAMILY HIT/MYND zinc finger-like 73 116 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 906 938 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 1004 1056 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 194 213 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 961 989 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 1072 1116 - -
Mtr3g3580 1116 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 19 1093 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 121 151 - -
Mtr3g3580 1116 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1093 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 1004 1032 - -
Mtr3g3580 1116 SUPERFAMILY Cysteine proteinases 580 892 IPR038765 -
Mtr3g3580 1116 Gene3D - 62 118 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 314 385 - -
Mtr3g3580 1116 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 585 600 IPR018200 GO:0004843|GO:0006511
Mtr3g3580 1116 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 584 889 IPR028889 -
Mtr3g3580 1116 Pfam MYND finger 76 113 IPR002893 -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 274 300 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 1072 1104 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 314 335 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 402 449 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 124 151 - -
Mtr3g3580 1116 Pfam Ubiquitin carboxyl-terminal hydrolase 584 886 IPR001394 GO:0004843|GO:0016579
Mtr3g3580 1116 Gene3D Cysteine proteinases 576 900 - -
Mtr3g3580 1116 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 337 356 - -
Mtr3g3580 1116 MobiDBLite consensus disorder prediction 426 449 - -
Mtr3g3580 1116 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3580 Mtr-Chr3 49663775 49670736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3580 564 943 Miscellaneous Gene Families AT4G31670 46.214 6.63e-118 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3580 K11855 - gmx:100795674 1387.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3580 3 49663775 49670736 Mtr3g3580 3 49663775 49670736 ECH